Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.9e-77 292.7 186 100.0
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.1e-59 233.8 182 68.1
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 5.3e-59 231.5 179 88.3
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 5.9e-58 228.0 182 86.8
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 2.2e-57 226.1 180 66.1
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 2.2e-57 226.1 177 81.4
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.5e-56 222.6 203 59.6
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 1.2e-55 220.3 180 80.6
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 6.1e-55 218.0 182 83.5
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 7.9e-55 217.6 180 81.7
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.0e-54 217.2 180 81.7
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.0e-54 217.2 180 81.7
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.0e-54 217.2 180 81.7
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 3.9e-54 215.3 180 80.6
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 3.9e-54 215.3 180 81.7
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.5e-53 213.4 180 80.0
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 3.3e-53 212.2 182 80.2
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 5.7e-53 211.5 180 81.1
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 1.3e-52 210.3 183 80.9
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 2.2e-52 209.5 178 79.2
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.8e-52 209.1 177 83.1
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 3.7e-52 208.8 180 79.4
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 3.7e-52 208.8 180 80.0
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 4.8e-52 208.4 180 81.1
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 8.2e-52 207.6 180 80.6
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 1.4e-51 206.8 177 78.5
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 1.8e-51 206.5 177 81.4
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 4.1e-51 205.3 177 79.7
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 5.3e-51 204.9 180 78.3
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 7.0e-51 204.5 181 78.5
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 9.1e-51 204.1 180 77.8
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.2e-50 203.8 181 78.5
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.2e-50 203.8 181 74.6
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 1.2e-50 203.8 180 77.8
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 1.5e-50 203.4 179 77.1
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 2.0e-50 203.0 182 79.7
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 4.5e-50 201.8 178 78.7
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 4.5e-50 201.8 178 78.7
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 7.7e-50 201.1 180 77.8
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 1.3e-49 200.3 177 79.7
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 1.7e-49 199.9 183 77.0
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.7e-49 199.9 180 78.9
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 2.9e-49 199.1 182 76.9
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 2.9e-49 199.1 180 77.2
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.8e-49 198.7 176 81.2
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 5.0e-49 198.4 178 78.1
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 8.5e-49 197.6 181 76.2
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.4e-48 196.8 182 76.9
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.9e-48 196.4 180 59.4
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.9e-48 196.4 181 78.5
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 2.5e-48 196.1 177 60.5
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 4.2e-48 195.3 179 59.2
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 4.2e-48 195.3 179 59.2
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 4.2e-48 195.3 179 78.2
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 5.5e-48 194.9 180 77.8
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 7.2e-48 194.5 179 77.7
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 9.4e-48 194.1 179 58.7
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.2e-47 193.7 179 77.7
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.6e-47 193.4 179 75.4
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.6e-47 193.4 179 75.4
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 1.6e-47 193.4 178 70.8
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.6e-47 192.2 177 76.3
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 4.7e-47 191.8 182 75.3
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 6.1e-47 191.4 180 76.1
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 8.0e-47 191.0 182 76.9
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 8.0e-47 191.0 179 76.5
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 8.0e-47 191.0 181 76.8
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 1.0e-46 190.7 181 74.6
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.4e-46 190.3 181 74.6
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 1.8e-46 189.9 177 76.8
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 2.3e-46 189.5 178 77.0
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 2.3e-46 189.5 177 78.0
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 3.9e-46 188.7 181 75.7
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.9e-46 188.7 251 46.2
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 5.2e-46 188.3 181 74.0
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.0e-45 186.4 181 73.5
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 2.6e-45 186.0 178 74.2
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 2.6e-45 186.0 177 77.4
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 3.3e-45 185.7 177 76.8
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 7.4e-45 184.5 181 75.1
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.3e-44 183.7 181 74.0
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 3.1e-43 179.1 181 54.1
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.6e-42 176.8 177 72.9
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 2.2e-41 172.9 177 49.7
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 2.9e-41 172.6 176 55.1
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.8e-41 172.2 178 55.6
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 1.1e-40 170.6 158 78.5
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 1.1e-40 170.6 206 61.2
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.5e-40 170.2 178 73.0
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 2.5e-40 169.5 176 70.5
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 3.2e-40 169.1 194 48.5
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 3.6e-39 165.6 186 49.5
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 4.7e-39 165.2 182 48.9
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 8.0e-39 164.5 179 69.3
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 8.0e-39 164.5 154 54.5
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 2.6e-37 159.5 140 74.3
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 7.5e-37 157.9 179 49.7
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 4.8e-36 155.2 144 80.6
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 4.8e-36 155.2 94 79.8
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 8.3e-36 154.5 148 79.1
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 5.3e-35 151.8 146 76.7
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 3.5e-34 149.1 198 64.1
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.7e-33 146.7 89 75.3
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 2.2e-33 146.4 93 74.2
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.2e-33 146.4 179 66.5
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.9e-33 146.0 89 74.2
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 5.0e-33 145.2 128 78.9
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.1e-32 144.1 89 73.0
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.5e-32 143.7 88 73.9
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.9e-32 143.3 142 77.5
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.6e-31 140.2 89 73.0
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 8.0e-31 137.9 85 75.3
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.0e-30 137.5 218 40.4
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 4.8e-28 128.6 121 57.0
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 1.8e-27 126.7 94 62.8
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.7e-26 122.9 133 49.6
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 1.3e-25 120.6 120 54.2
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.2e-20 103.2 168 38.1
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 1.1e-19 100.9 119 43.7
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 3.1e-14 82.8 103 46.6
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 9.2e-11 71.2 51 66.7
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 1.2e-07 60.8 36 75.0
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 2.8e-07 59.7 34 73.5
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 5.2e-06 55.5 47 48.9
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 8.9e-06 54.7 36 66.7


User provided reference genes

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