Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 3.8e-41 171.0 84 100.0
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 3.3e-40 167.9 82 100.0
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.2e-37 159.5 83 89.2
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 5.7e-37 157.1 82 90.2
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 7.5e-37 156.8 82 92.7
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 1.3e-36 156.0 82 90.2
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 1.7e-36 155.6 82 89.0
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-36 155.6 82 89.0
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-36 155.6 82 89.0
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.2e-36 155.2 82 89.0
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 2.2e-36 155.2 82 89.0
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.9e-36 154.8 82 89.0
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.9e-36 154.8 82 89.0
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 3.7e-36 154.5 82 87.8
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.7e-36 154.5 82 87.8
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.9e-36 154.1 82 87.8
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.9e-36 154.1 82 87.8
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.9e-36 154.1 82 87.8
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.9e-36 154.1 82 87.8
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 4.9e-36 154.1 82 87.8
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-35 152.9 82 89.0
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-35 152.9 82 89.0
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.1e-35 152.9 82 86.6
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.4e-35 152.5 83 86.7
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-35 152.5 82 87.8
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.8e-35 152.1 82 89.0
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-35 152.1 82 87.8
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-35 152.1 82 87.8
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.8e-35 152.1 82 87.8
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 1.8e-35 152.1 82 86.6
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 2.4e-35 151.8 82 89.0
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 2.4e-35 151.8 82 87.8
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-35 151.8 82 87.8
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-35 151.8 82 85.4
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 2.4e-35 151.8 82 87.8
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 3.2e-35 151.4 82 87.8
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 3.2e-35 151.4 82 87.8
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 3.2e-35 151.4 82 86.6
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 4.1e-35 151.0 82 87.8
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 4.1e-35 151.0 82 86.6
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 4.1e-35 151.0 82 87.8
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 4.1e-35 151.0 83 90.4
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 4.1e-35 151.0 82 86.6
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 4.1e-35 151.0 82 87.8
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 5.4e-35 150.6 82 84.1
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 5.4e-35 150.6 82 86.6
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 5.4e-35 150.6 82 86.6
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 5.4e-35 150.6 82 87.8
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 9.2e-35 149.8 82 84.1
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 9.2e-35 149.8 82 86.6
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 9.2e-35 149.8 82 86.6
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 9.2e-35 149.8 82 89.0
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 1.2e-34 149.4 82 87.8
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 1.2e-34 149.4 82 86.6
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.2e-34 149.4 82 86.6
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 1.2e-34 149.4 82 86.6
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.6e-34 149.1 82 86.6
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.6e-34 149.1 82 85.4
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.6e-34 149.1 82 85.4
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 2.0e-34 148.7 82 85.4
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 2.7e-34 148.3 82 85.4
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 2.7e-34 148.3 82 85.4
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.7e-34 148.3 82 84.1
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 3.5e-34 147.9 82 84.1
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 3.5e-34 147.9 82 84.1
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.5e-34 147.9 82 84.1
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 3.5e-34 147.9 81 86.4
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 3.5e-34 147.9 82 85.4
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 3.5e-34 147.9 82 84.1
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 3.5e-34 147.9 81 85.2
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 4.6e-34 147.5 82 84.1
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 4.6e-34 147.5 82 85.4
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 4.6e-34 147.5 82 85.4
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 5.9e-34 147.1 82 85.4
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 5.9e-34 147.1 82 85.4
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 5.9e-34 147.1 82 82.9
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 5.9e-34 147.1 82 82.9
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 7.8e-34 146.7 82 81.7
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 1.0e-33 146.4 82 84.1
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.0e-33 146.4 82 84.1
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 1.0e-33 146.4 82 82.9
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.3e-33 146.0 82 82.9
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.3e-33 146.0 82 84.1
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.7e-33 145.6 80 86.2
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-33 145.2 82 81.7
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-33 145.2 82 81.7
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-33 145.2 82 81.7
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 2.3e-33 145.2 82 84.1
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 3.0e-33 144.8 82 84.1
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 3.0e-33 144.8 82 84.1
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 3.0e-33 144.8 82 84.1
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 3.0e-33 144.8 82 81.7
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 5.0e-33 144.1 82 80.5
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 5.0e-33 144.1 82 81.7
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 6.6e-33 143.7 82 81.7
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 8.6e-33 143.3 82 80.5
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 8.6e-33 143.3 82 80.5
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 1.9e-32 142.1 103 71.8
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 1.9e-32 142.1 82 80.5
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 1.9e-32 142.1 82 79.3
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 2.5e-32 141.7 82 81.7
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 3.3e-32 141.4 82 80.5
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 4.3e-32 141.0 82 80.5
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 4.3e-32 141.0 82 79.3
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 5.6e-32 140.6 82 78.0
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 5.6e-32 140.6 81 80.2
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 7.3e-32 140.2 82 81.7
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 9.5e-32 139.8 82 78.0
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 9.5e-32 139.8 81 79.0
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.6e-31 139.0 82 78.0
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 2.8e-31 138.3 82 76.8
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 3.6e-31 137.9 82 78.0
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 4.7e-31 137.5 82 76.8
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 6.2e-31 137.1 82 78.0
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 6.2e-31 137.1 82 79.3
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 8.0e-31 136.7 82 78.0
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-30 136.3 82 76.8
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-30 136.3 82 76.8
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.1e-30 136.3 94 71.3
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 1.1e-30 136.3 82 72.0
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.4e-30 136.0 82 75.6
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.4e-30 136.0 82 76.8
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 4.0e-30 134.4 82 72.0
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.0e-30 134.4 82 76.8
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.0e-30 134.4 82 76.8
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.2e-30 134.0 82 75.6
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 5.2e-30 134.0 82 74.4
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 5.2e-30 134.0 82 76.8
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.2e-30 134.0 82 74.4
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.2e-30 134.0 82 74.4
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 5.2e-30 134.0 82 76.8
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 5.2e-30 134.0 82 78.0
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.8e-30 133.7 82 75.6
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.8e-30 133.7 82 76.8
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.8e-30 133.7 82 76.8
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 8.9e-30 133.3 82 76.8
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.5e-29 132.5 82 76.8
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.4e-29 131.3 82 73.2
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 4.4e-29 131.0 82 75.6
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 5.8e-29 130.6 82 76.8
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.9e-28 128.3 82 75.6
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 2.9e-28 128.3 82 74.4
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 4.9e-28 127.5 82 75.6
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 6.4e-28 127.1 82 72.0
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 6.4e-28 127.1 82 72.0
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.4e-27 125.9 82 73.2
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 3.2e-27 124.8 82 70.7
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.5e-26 121.3 82 69.5
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 8.6e-25 116.7 75 70.7
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 4.3e-24 114.4 79 69.6
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 2.6e-21 105.1 76 69.7
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 3.4e-21 104.8 65 76.9
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 1.7e-20 102.4 54 81.5
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.2e-19 98.2 57 78.9
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 7.1e-19 97.1 57 78.9
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 3.0e-17 91.7 82 63.4
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 3.0e-17 91.7 82 64.6
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 3.3e-16 88.2 71 60.6
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.7e-12 75.9 71 54.9
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.2e-10 69.7 70 54.3
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 4.3e-08 61.2 74 43.2
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 5.2e-06 54.3 43 65.1


User provided reference genes

Program Settings