Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 1.5e-204 716.1 385 100.0
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 3.4e-116 422.5 381 65.1
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.3e-115 420.6 381 64.6
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 2.0e-113 413.3 381 64.6
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 2.7e-113 412.9 338 69.8
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.0e-109 401.0 413 59.8
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 7.8e-97 358.2 423 53.2
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 6.2e-94 348.6 409 53.1
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 8.9e-93 344.7 324 63.3
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 1.5e-92 344.0 396 54.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.1e-90 337.8 394 54.8
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 5.1e-88 328.9 403 51.4
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 6.6e-88 328.6 396 53.3
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 5.6e-87 325.5 396 54.0
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 8.1e-86 321.6 397 50.1
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 1.5e-84 317.4 406 50.5
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.5e-84 317.4 392 51.5
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 5.8e-84 315.5 419 49.4
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 7.6e-84 315.1 390 50.8
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.2e-81 307.8 401 49.6
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.7e-80 303.9 411 48.7
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 3.0e-80 303.1 405 48.4
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 1.1e-79 301.2 583 39.6
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 1.5e-79 300.8 389 49.9
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 2.5e-79 300.1 426 47.4
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 4.3e-79 299.3 412 47.8
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 5.6e-79 298.9 420 48.1
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.6e-78 297.4 420 48.8
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 4.7e-78 295.8 388 48.7
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 6.2e-78 295.4 424 47.9
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 3.1e-77 293.1 441 46.0
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 4.0e-77 292.7 398 50.3
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 6.9e-77 292.0 390 50.3
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 9.0e-77 291.6 455 45.7
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.5e-76 290.8 422 45.5
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 1.5e-76 290.8 377 50.4
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 5.8e-76 288.9 388 51.3
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.3e-75 287.7 396 48.7
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 2.2e-75 287.0 392 50.0
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 2.2e-75 287.0 391 50.9
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 6.4e-75 285.4 406 47.8
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 6.4e-75 285.4 388 49.2
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 4.2e-74 282.7 395 48.4
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 4.2e-74 282.7 389 48.1
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 3.5e-73 279.6 426 46.7
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.0e-72 278.1 427 45.4
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.5e-71 274.2 455 43.3
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 2.1e-70 270.4 455 42.4
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.8e-70 270.0 379 46.7
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.8e-70 270.0 229 64.6
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 8.1e-70 268.5 379 48.5
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.8e-69 267.3 221 65.6
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 9.0e-69 265.0 390 47.4
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 4.5e-68 262.7 376 46.8
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 1.3e-67 261.2 380 45.8
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.3e-67 261.2 432 43.5
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 4.2e-66 256.1 403 44.4
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 9.3e-66 255.0 404 42.8
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 3.5e-65 253.1 398 42.7
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 7.9e-65 251.9 433 43.0
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 5.1e-64 249.2 387 43.4
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 8.7e-64 248.4 327 48.6
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.1e-63 248.1 395 43.8
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 3.3e-63 246.5 404 43.3
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 2.1e-62 243.8 397 45.6
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 2.1e-62 243.8 256 55.1
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 4.8e-62 242.7 421 43.9
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.1e-61 241.5 218 60.1
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 2.4e-61 240.4 416 43.0
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 1.5e-60 237.7 429 41.7
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 3.4e-60 236.5 408 40.7
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.7e-59 234.2 198 61.6
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 3.8e-59 233.0 273 52.0
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.4e-58 231.1 390 44.9
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.9e-58 230.7 419 42.5
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 9.3e-58 228.4 380 44.2
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.1e-57 227.3 398 42.5
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.1e-57 227.3 399 39.8
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.0e-56 224.9 208 60.1
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 3.0e-56 223.4 220 57.7
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 3.9e-56 223.0 264 51.9
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.5e-55 221.1 403 43.9
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 5.6e-55 219.2 415 41.2
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 7.4e-55 218.8 500 35.8
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 1.3e-54 218.0 351 43.3
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.7e-54 216.5 386 44.6
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 9.0e-53 211.8 163 65.6
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 5.8e-52 209.1 330 45.5
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 8.4e-51 205.3 427 37.2
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.1e-50 204.9 381 41.5
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 4.2e-50 203.0 372 43.8
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 3.3e-47 193.4 441 36.5
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 5.7e-47 192.6 286 43.7
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 7.4e-47 192.2 315 43.5
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 3.1e-45 186.8 309 43.0
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 2.5e-42 177.2 205 49.8
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 3.2e-42 176.8 172 54.7
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 7.2e-42 175.6 159 59.1
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 9.3e-42 175.3 386 38.1
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 4.6e-41 172.9 391 36.6
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.0e-40 171.8 130 62.3
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.5e-39 167.9 393 34.9
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.9e-39 167.5 384 36.5
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 3.3e-39 166.8 384 36.5
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 4.3e-39 166.4 384 36.2
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 3.2e-34 150.2 274 39.4
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.6e-33 147.9 156 50.0
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 8.8e-32 142.1 140 55.7
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.1e-31 141.7 217 45.6
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 5.7e-31 139.4 388 36.9
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 7.4e-31 139.0 240 41.2
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.8e-30 137.1 140 57.1
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 1.4e-29 134.8 315 37.8
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.9e-26 124.4 127 50.4
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 7.2e-26 122.5 134 47.8
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.2e-24 116.3 224 40.6
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 5.7e-23 112.8 76 72.4
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.2e-20 105.1 356 30.3
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 5.9e-20 102.8 93 52.7
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 8.5e-19 99.0 82 62.2
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.9e-18 97.8 175 43.4
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.3e-16 90.9 336 29.5
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 6.7e-16 89.4 258 33.7
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 2.0e-15 87.8 70 61.4
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.8e-14 84.0 119 41.2
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.1e-13 82.0 177 35.6
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 3.5e-12 77.0 304 30.6
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 5.9e-12 76.3 109 42.2
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.7e-11 74.7 106 41.5
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 1.9e-10 71.2 43 69.8
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 2.5e-10 70.9 329 29.2
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 7.2e-10 69.3 209 33.0
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 1.5e-07 61.6 291 27.8
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 4.4e-07 60.1 340 27.6
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 5.7e-07 59.7 43 62.8
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.7e-06 58.2 56 51.8
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.7e-06 58.2 60 46.7
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 1.7e-06 58.2 83 44.6
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 1.7e-06 58.2 83 44.6
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 2.8e-06 57.4 86 38.4
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 3.7e-06 57.0 84 39.3
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 4.8e-06 56.6 52 51.9
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 4.8e-06 56.6 84 38.1
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 8.3e-06 55.8 84 38.1


User provided reference genes

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