Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1244300 Malus domestica HOM05D006085 ORTHO05D007559 1.0e-44 183.0 86 100.0
MD17G1236100 Malus domestica HOM05D006085 ORTHO05D007559 1.5e-27 125.9 90 68.9
Prupe.3G189400 Prunus persica HOM05D006085 ORTHO05D007559 2.0e-24 115.5 90 64.4
RcHm_v2.0_Chr2g0127641 Rosa chinensis HOM05D006085 ORTHO05D007559 1.7e-23 112.5 90 63.3
FvH4_6g26520 Fragaria vesca HOM05D006085 ORTHO05D007559 1.1e-22 109.8 90 61.1
VMungo1127G1010 Vigna mungo HOM05D006085 ORTHO05D007559 1.8e-22 109.0 66 74.2
FAN02G0764 Fragaria x ananassa HOM05D006085 ORTHO05D007559 2.4e-22 108.6 89 61.8
Haze_13204 Corylus avellana HOM05D006085 ORTHO05D007559 1.2e-21 106.3 90 60.0
TAR626G0071 Trochodendron aralioides HOM05D006085 ORTHO05D007559 1.6e-21 105.9 90 60.0
GSVIVG01020577001 Vitis vinifera HOM05D006085 ORTHO05D007559 4.5e-21 104.4 90 58.9
MSTRG.15247 Avicennia marina HOM05D006085 ORTHO05D007559 7.7e-21 103.6 90 58.9
CiPaw.03G179300 Carya illinoinensis HOM05D006085 ORTHO05D007559 7.7e-21 103.6 90 60.0
QL08p039688 Quercus lobata HOM05D006085 ORTHO05D007559 2.2e-20 102.1 90 60.0
TWI59G1154 Tripterygium wilfordii HOM05D006085 ORTHO05D007559 2.2e-20 102.1 90 57.8
Gohir.A13G055500 Gossypium hirsutum HOM05D006085 ORTHO05D007559 2.9e-20 101.7 90 55.6
Gorai.013G075800 Gossypium raimondii HOM05D006085 ORTHO05D007559 2.9e-20 101.7 90 55.6
Actinidia30466 Actinidia chinensis HOM05D006085 ORTHO05D007559 5.0e-20 100.9 90 57.8
Ca_18934_v3 Cicer arietinum L. HOM05D006085 ORTHO05D007559 5.0e-20 100.9 90 56.7
PGR042G2089 Punica granatum HOM05D006085 ORTHO05D007559 5.0e-20 100.9 90 55.6
SGA_v2.0_scaffold70G23511 Striga asiatica HOM05D006085 ORTHO05D007559 6.5e-20 100.5 90 54.4
Lj8C109T7 Lonicera japonica HOM05D006085 ORTHO05D007559 1.1e-19 99.8 90 55.6
Gohir.D13G066600 Gossypium hirsutum HOM05D006085 ORTHO05D007559 1.5e-19 99.4 90 54.4
Hma1.2p1_0002F.1_g002100 Hydrangea macrophylla HOM05D006085 ORTHO05D007559 1.5e-19 99.4 90 56.7
Oeu036070.3 Olea europaea HOM05D006085 ORTHO05D007559 1.5e-19 99.4 90 57.8
Duzib052G1056 Durio zibethinus HOM05D006085 ORTHO05D007559 1.9e-19 99.0 90 53.3
Rhsim06G0139100 Rhododendron simsii HOM05D006085 ORTHO05D007559 1.9e-19 99.0 90 57.8
DCAR_021253 Daucus carota HOM05D006085 ORTHO05D007559 3.2e-19 98.2 90 55.6
Duzib132G0978 Durio zibethinus HOM05D006085 ORTHO05D007559 3.2e-19 98.2 93 49.5
Lalb_Chr19g0135161 Lupinus albus HOM05D006085 ORTHO05D007559 5.5e-19 97.4 90 54.4
CSS0044112 Camellia sinensis var. sinensis HOM05D006085 ORTHO05D007559 7.2e-19 97.1 90 55.6
Ciclev10014891m.g Citrus clementina HOM05D006085 ORTHO05D007559 1.2e-18 96.3 90 55.6
Glyma.12G116400 Glycine max HOM05D006085 ORTHO05D007559 1.2e-18 96.3 90 53.3
vmacro12328 Vaccinium macrocarpon HOM05D006085 ORTHO05D007559 1.2e-18 96.3 90 56.7
Glyma.06G290500 Glycine max HOM05D006085 ORTHO05D007559 1.6e-18 95.9 90 53.3
Phvul.011G125900 Phaseolus vulgaris HOM05D006085 ORTHO05D007559 2.1e-18 95.5 90 54.4
Nn1g04152 Nelumbo nucifera HOM05D006085 ORTHO05D007559 2.7e-18 95.1 90 53.3
arahy.Tifrunner.gnm1.ann1.9UNY9A Arachis hypogaea HOM05D006085 ORTHO05D007559 3.6e-18 94.7 90 53.3
arahy.Tifrunner.gnm1.ann1.C4PCKW Arachis hypogaea HOM05D006085 ORTHO05D007559 3.6e-18 94.7 90 53.3
arahy.Tifrunner.gnm1.ann1.UWD03M Arachis hypogaea HOM05D006085 ORTHO05D007559 3.6e-18 94.7 90 53.3
Thecc.02G182800 Theobroma cacao HOM05D006085 ORTHO05D007559 3.6e-18 94.7 90 52.2
Cpa.g.sc83.67 Carica papaya HOM05D006085 ORTHO05D007559 4.7e-18 94.4 90 55.6
COL.COLO4_05950 Corchorus olitorius HOM05D006085 ORTHO05D007559 4.7e-18 94.4 90 52.2
Nitab4.5_0000638g0100 Nicotiana tabacum HOM05D006085 ORTHO05D007559 8.0e-18 93.6 77 59.7
Sed0017729 Sechium edule HOM05D006085 ORTHO05D007559 8.0e-18 93.6 90 52.2
Cc05_g07490 Coffea canephora HOM05D006085 ORTHO05D007559 1.0e-17 93.2 90 55.6
arahy.Tifrunner.gnm1.ann1.RY71RI Arachis hypogaea HOM05D006085 ORTHO05D007559 1.4e-17 92.8 90 53.3
BcaC07g41200 Brassica carinata HOM05D006085 ORTHO05D007559 1.8e-17 92.4 90 51.1
A09p58770 Brassica napus HOM05D006085 ORTHO05D007559 1.8e-17 92.4 90 51.1
C08p42090 Brassica napus HOM05D006085 ORTHO05D007559 1.8e-17 92.4 90 51.1
BolC8t51769H Brassica oleracea HOM05D006085 ORTHO05D007559 1.8e-17 92.4 90 51.1
Medtr4g078555 Medicago truncatula HOM05D006085 ORTHO05D007559 1.8e-17 92.4 90 53.3
Sp3g33890 Schrenkiella parvula HOM05D006085 ORTHO05D007559 1.8e-17 92.4 90 53.3
Sc12g0003150 Simmondsia chinensis HOM05D006085 ORTHO05D007559 1.8e-17 92.4 90 53.3
BcaB08g34934 Brassica carinata HOM05D006085 ORTHO05D007559 3.0e-17 91.7 90 51.1
BraA09t41263Z Brassica rapa HOM05D006085 ORTHO05D007559 4.0e-17 91.3 90 51.1
CARHR111290 Cardamine hirsuta HOM05D006085 ORTHO05D007559 4.0e-17 91.3 90 51.1
MELO3C018706.2 Cucumis melo HOM05D006085 ORTHO05D007559 4.0e-17 91.3 90 52.2
Prupe.3G139600 Prunus persica HOM05D006085 ORTHO05D007559 4.0e-17 91.3 94 54.3
CANSAT64G0553 Cannabis sativa HOM05D006085 ORTHO05D007559 5.2e-17 90.9 90 52.2
Atru.chr6.2894 Acer truncatum HOM05D006085 ORTHO05D007559 6.8e-17 90.5 89 50.6
AL3G53720 Arabidopsis lyrata HOM05D006085 ORTHO05D007559 6.8e-17 90.5 90 51.1
CsaV3_7G005870 Cucumis sativus L. HOM05D006085 ORTHO05D007559 6.8e-17 90.5 90 52.2
Migut.M00167 Erythranthe guttata HOM05D006085 ORTHO05D007559 6.8e-17 90.5 90 53.3
ClCG07G002490 Citrullus lanatus HOM05D006085 ORTHO05D007559 8.8e-17 90.1 90 52.2
Lj3g0015664 Lotus japonicus HOM05D006085 ORTHO05D007559 8.8e-17 90.1 90 53.3
CAN.G209.32 Capsicum annuum HOM05D006085 ORTHO05D007559 1.5e-16 89.4 90 52.2
Thhalv10001957m.g Eutrema salsugineum HOM05D006085 ORTHO05D007559 1.5e-16 89.4 90 51.1
HanXRQChr10g0284071 Helianthus annuus HOM05D006085 ORTHO05D007559 1.5e-16 89.4 105 47.6
Potri.007G139000 Populus trichocarpa HOM05D006085 ORTHO05D007559 1.5e-16 89.4 90 51.1
Solyc07g053820.3 Solanum lycopersicum HOM05D006085 ORTHO05D007559 1.5e-16 89.4 90 52.2
Sopen07g027790 Solanum pennellii HOM05D006085 ORTHO05D007559 1.5e-16 89.4 90 52.2
PGSC0003DMG400032825 Solanum tuberosum HOM05D006085 ORTHO05D007559 1.5e-16 89.4 90 52.2
THA.LOC104804055 Tarenaya hassleriana HOM05D006085 ORTHO05D007559 1.5e-16 89.4 90 52.2
AT2G20635 Arabidopsis thaliana HOM05D006085 ORTHO05D007559 2.0e-16 89.0 90 50.0
Lsat_1_v5_gn_4_66841 Lactuca sativa HOM05D006085 ORTHO05D007559 2.0e-16 89.0 89 51.7
Psat7g168600 Pisum sativum HOM05D006085 ORTHO05D007559 2.0e-16 89.0 90 53.3
Carub.0003s3516 Capsella rubella HOM05D006085 ORTHO05D007559 4.4e-16 87.8 89 50.6
Sabra07G0112000 Salix brachista HOM05D006085 ORTHO05D007559 4.4e-16 87.8 90 50.0
MBI18_g34208_MAGBIO Magnolia biondii HOM05D006085 ORTHO05D007559 1.7e-15 85.9 90 50.0
Hund01031 Selenicereus undatus HOM05D006085 ORTHO05D007559 2.2e-15 85.5 90 52.2
ECA234G4181 Erigeron canadensis HOM05D006085 ORTHO05D007559 3.7e-15 84.7 105 46.7
Aqoxy1G02363 Aquilegia oxysepala HOM05D006085 ORTHO05D007559 6.3e-15 84.0 90 50.0
TPR.G107 Trifolium pratense HOM05D006085 ORTHO05D007559 8.3e-15 83.6 88 48.9
Aa31LG8G17530 Aethionema arabicum HOM05D006085 ORTHO05D007559 1.8e-14 82.4 90 47.8
ATR0217G009 Amborella trichopoda HOM05D006085 ORTHO05D007559 1.8e-14 82.4 91 47.3
HPP92_014185 Vanilla planifolia HOM05D006085 ORTHO05D007559 1.8e-14 82.4 90 47.8
Manes.13G147400 Manihot esculenta HOM05D006085 ORTHO05D007559 9.1e-14 80.1 89 47.2
PSO541G4164 Papaver somniferum HOM05D006085 ORTHO05D007559 1.6e-13 79.3 89 46.1
PSO675G5281 Papaver somniferum HOM05D006085 ORTHO05D007559 1.6e-13 79.3 89 46.1
Peaxi162Scf00981g00430 Petunia axillaris HOM05D006085 ORTHO05D007559 1.6e-13 79.3 108 43.5
CDE04G1826 Ceratophyllum demersum HOM05D006085 ORTHO05D007559 5.9e-13 77.4 90 51.1
Eucgr.A01834 Eucalyptus grandis HOM05D006085 ORTHO05D007559 5.0e-12 74.3 60 55.0
AUR62038975 Chenopodium quinoa HOM05D006085 ORTHO05D007559 6.6e-12 73.9 89 43.8
AUR62038885 Chenopodium quinoa HOM05D006085 ORTHO05D007559 8.6e-12 73.6 89 44.9
Zm00001eb322380 Zea mays HOM05D006085 ORTHO05D007559 1.6e-10 69.3 89 41.6
Os07g0508500 Oryza sativa ssp. japonica HOM05D006085 ORTHO05D007559 4.7e-10 67.8 89 41.6
Cc00_g12340 Coffea canephora HOM05D006085 ORTHO05D007559 2.3e-09 65.5 70 50.0
Ah.01g015320 Amaranthus hybridus HOM05D006085 ORTHO05D007559 1.5e-08 62.8 89 39.3
Nitab4.5_0001752g0030 Nicotiana tabacum HOM05D006085 ORTHO05D007559 1.3e-07 59.7 68 47.1
Pp3c20_12130 Physcomitrium patens HOM05D006085 ORTHO05D007559 5.4e-06 54.3 92 32.6
Manes.13G145916 Manihot esculenta HOM05D006085 ORTHO05D007559 7.0e-06 53.9 85 38.8


User provided reference genes

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