Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 8.1e-35 149.8 74 100.0
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 2.9e-24 114.8 62 88.7
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 1.0e-21 106.3 60 83.3
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 2.3e-21 105.1 62 75.8
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 3.0e-21 104.8 60 81.7
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 8.7e-21 103.2 60 80.0
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 1.1e-20 102.8 62 74.2
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 1.5e-20 102.4 59 81.4
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 1.9e-20 102.1 60 78.3
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 1.9e-20 102.1 60 78.3
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 1.9e-20 102.1 60 78.3
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 4.3e-20 100.9 62 74.2
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.3e-20 100.9 62 74.2
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.3e-20 100.9 62 74.2
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.3e-20 100.9 62 74.2
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 4.3e-20 100.9 62 72.6
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 5.6e-20 100.5 60 78.3
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 5.6e-20 100.5 59 79.7
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 7.3e-20 100.1 60 75.0
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 7.3e-20 100.1 60 75.0
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 7.3e-20 100.1 60 75.0
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 7.3e-20 100.1 60 75.0
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 7.3e-20 100.1 60 76.7
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 1.6e-19 99.0 60 76.7
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 1.6e-19 99.0 60 76.7
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 1.6e-19 99.0 60 76.7
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 2.1e-19 98.6 60 75.0
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 2.1e-19 98.6 60 76.7
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 2.1e-19 98.6 72 66.7
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 2.1e-19 98.6 60 76.7
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 2.8e-19 98.2 57 80.7
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 2.8e-19 98.2 72 66.7
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 2.8e-19 98.2 60 76.7
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 4.8e-19 97.4 60 75.0
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 4.8e-19 97.4 60 73.3
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 4.8e-19 97.4 72 66.7
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 4.8e-19 97.4 60 71.7
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 6.2e-19 97.1 60 78.3
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 8.1e-19 96.7 60 71.7
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 1.1e-18 96.3 60 73.3
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 1.1e-18 96.3 59 76.3
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 1.4e-18 95.9 60 71.7
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 1.4e-18 95.9 60 73.3
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.8e-18 95.5 60 71.7
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.8e-18 95.5 60 71.7
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 1.8e-18 95.5 60 76.7
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 1.8e-18 95.5 60 76.7
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 1.8e-18 95.5 60 75.0
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 2.4e-18 95.1 60 75.0
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 2.4e-18 95.1 60 73.3
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 3.1e-18 94.7 60 71.7
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 3.1e-18 94.7 60 71.7
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.0e-18 94.4 60 71.7
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 4.0e-18 94.4 60 71.7
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 5.3e-18 94.0 60 75.0
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 6.9e-18 93.6 59 74.6
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 1.2e-17 92.8 62 67.7
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 1.5e-17 92.4 60 71.7
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 2.6e-17 91.7 57 75.4
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 2.6e-17 91.7 60 66.7
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 4.5e-17 90.9 54 77.8
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 5.8e-17 90.5 57 71.9
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 7.6e-17 90.1 57 71.9
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 7.6e-17 90.1 57 71.9
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 1.3e-16 89.4 75 60.0
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.9e-16 88.2 60 68.3
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 6.4e-16 87.0 58 69.0
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 4.2e-15 84.3 61 65.6
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 5.4e-15 84.0 58 67.2
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 1.6e-14 82.4 57 64.9
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 4.3e-12 74.3 43 79.1
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 1.6e-11 72.4 43 76.7
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 3.7e-11 71.2 59 62.7
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 1.1e-10 69.7 50 64.0
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 5.3e-10 67.4 60 51.7
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 9.0e-10 66.6 44 68.2
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.2e-09 66.2 44 65.9
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 2.0e-09 65.5 42 69.0
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 4.5e-09 64.3 59 52.5
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.6e-09 63.5 59 55.9
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.0e-08 63.2 59 55.9
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.0e-08 63.2 59 55.9
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.3e-08 62.8 48 58.3
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.3e-08 62.8 59 54.2
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.3e-08 62.8 59 54.2
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.3e-08 62.8 59 54.2
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.3e-08 62.8 59 54.2
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 2.9e-08 61.6 64 51.6
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 2.9e-08 61.6 64 51.6
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 3.8e-08 61.2 34 76.5
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 2.5e-07 58.5 60 53.3
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 3.2e-07 58.2 43 60.5
Mapoly0010s0075 Marchantia polymorpha HOM05D007316 ORTHO05D009393 9.3e-07 56.6 55 43.6
MCO03G596 Micromonas commoda HOM05D007316 ORTHO05D009393 9.3e-07 56.6 56 46.4
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 1.6e-06 55.8 68 44.1
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 2.1e-06 55.5 39 64.1
HPP92_022152 Vanilla planifolia HOM05D007316 ORTHO05D009393 2.1e-06 55.5 60 43.3
Solyc08g006570.4 Solanum lycopersicum HOM05D007316 ORTHO05D009393 3.5e-06 54.7 34 73.5
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 4.6e-06 54.3 35 68.6
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 6.0e-06 53.9 36 61.1
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 6.0e-06 53.9 60 50.0


User provided reference genes

Program Settings