Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1238400 Malus domestica HOM05D006335 ORTHO05D007617 8.0e-112 407.1 211 100.0
Prupe.3G117900 Prunus persica HOM05D006335 ORTHO05D007617 1.9e-49 199.9 198 60.1
Prupe.3G121400 Prunus persica HOM05D006335 ORTHO05D007617 5.0e-45 185.3 202 56.4
MD08G1181200 Malus domestica HOM05D006335 ORTHO05D007617 3.2e-44 182.6 110 86.4
RcHm_v2.0_Chr2g0129361 Rosa chinensis HOM05D006335 ORTHO05D007617 1.1e-36 157.5 176 50.0
RcHm_v2.0_Chr2g0129291 Rosa chinensis HOM05D006335 ORTHO05D007617 1.6e-35 153.7 180 52.2
FvH4_6g27231 Fragaria vesca HOM05D006335 ORTHO05D007617 4.6e-35 152.1 168 54.2
RcHm_v2.0_Chr2g0129301 Rosa chinensis HOM05D006335 ORTHO05D007617 1.5e-30 137.1 167 47.9
QL08p041551 Quercus lobata HOM05D006335 ORTHO05D007617 1.4e-28 130.6 189 43.4
FAN14G0983 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.9e-28 130.2 109 64.2
FvH4_6g27220 Fragaria vesca HOM05D006335 ORTHO05D007617 2.5e-28 129.8 105 63.8
FAN09G0462 Fragaria x ananassa HOM05D006335 ORTHO05D007617 9.4e-28 127.9 105 61.9
FAN05G4039 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.1e-27 126.7 105 61.9
Glyma.06G277900 Glycine max HOM05D006335 ORTHO05D007617 7.9e-27 124.8 194 41.2
Lalb_Chr01g0005971 Lupinus albus HOM05D006335 ORTHO05D007617 3.9e-26 122.5 196 42.3
CANSAT64G2990 Cannabis sativa HOM05D006335 ORTHO05D007617 1.1e-25 120.9 126 52.4
CiPaw.04G132900 Carya illinoinensis HOM05D006335 ORTHO05D007617 1.5e-25 120.6 118 50.0
Lj3g0002577 Lotus japonicus HOM05D006335 ORTHO05D007617 4.4e-25 119.0 203 40.9
Glyma.15G020200 Glycine max HOM05D006335 ORTHO05D007617 5.7e-25 118.6 194 40.7
VMungo1127G1825 Vigna mungo HOM05D006335 ORTHO05D007617 5.7e-25 118.6 192 38.5
Phvul.011G133700 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 2.2e-24 116.7 181 40.3
Phvul.011G133000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 6.3e-24 115.2 200 39.0
Ca_18884_v3 Cicer arietinum L. HOM05D006335 ORTHO05D007617 1.1e-23 114.4 204 38.7
Medtr4g079810 Medicago truncatula HOM05D006335 ORTHO05D007617 1.8e-23 113.6 186 39.2
TPR.G28309 Trifolium pratense HOM05D006335 ORTHO05D007617 7.0e-23 111.7 142 45.1
Medtr4g079460 Medicago truncatula HOM05D006335 ORTHO05D007617 9.1e-23 111.3 181 38.1
VMungo1127G1181 Vigna mungo HOM05D006335 ORTHO05D007617 1.5e-22 110.5 209 35.9
Actinidia04365 Actinidia chinensis HOM05D006335 ORTHO05D007617 2.6e-22 109.8 147 44.2
Duzib147G1311 Durio zibethinus HOM05D006335 ORTHO05D007617 2.6e-22 109.8 129 46.5
FAN05G3171 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.6e-22 109.8 173 43.9
TWI59G1087 Tripterygium wilfordii HOM05D006335 ORTHO05D007617 3.5e-22 109.4 133 42.1
Psat7g165600 Pisum sativum HOM05D006335 ORTHO05D007617 4.5e-22 109.0 186 34.4
Phvul.011G131000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 5.9e-22 108.6 202 39.1
FAN14G0259 Fragaria x ananassa HOM05D006335 ORTHO05D007617 7.7e-22 108.2 105 56.2
Hma1.2p1_0178F.1_g078870 Hydrangea macrophylla HOM05D006335 ORTHO05D007617 1.3e-21 107.5 117 47.9
Psat7g165440 Pisum sativum HOM05D006335 ORTHO05D007617 1.7e-21 107.1 197 33.5
Glyma.06G279000 Glycine max HOM05D006335 ORTHO05D007617 3.8e-21 105.9 124 46.8
arahy.Tifrunner.gnm1.ann1.IJ2KIS Arachis hypogaea HOM05D006335 ORTHO05D007617 5.0e-21 105.5 204 35.3
arahy.Tifrunner.gnm1.ann1.Y7YMH3 Arachis hypogaea HOM05D006335 ORTHO05D007617 5.5e-20 102.1 204 35.3
arahy.Tifrunner.gnm1.ann1.E7WT9K Arachis hypogaea HOM05D006335 ORTHO05D007617 7.2e-20 101.7 185 36.8
Thecc.01G149900 Theobroma cacao HOM05D006335 ORTHO05D007617 7.2e-20 101.7 111 45.9
Cpa.g.sc209.36 Carica papaya HOM05D006335 ORTHO05D007617 1.2e-19 100.9 121 46.3
Gorai.006G001500 Gossypium raimondii HOM05D006335 ORTHO05D007617 1.8e-18 97.1 100 51.0
Gohir.D09G001300 Gossypium hirsutum HOM05D006335 ORTHO05D007617 4.0e-18 95.9 100 50.0
Cc05_g08270 Coffea canephora HOM05D006335 ORTHO05D007617 5.2e-18 95.5 118 44.1
FAN21G0105 Fragaria x ananassa HOM05D006335 ORTHO05D007617 5.2e-18 95.5 174 39.1
Sed0026533 Sechium edule HOM05D006335 ORTHO05D007617 1.1e-17 94.4 115 47.8
Manes.01G133300 Manihot esculenta HOM05D006335 ORTHO05D007617 4.4e-17 92.4 164 37.2
COL.COLO4_33572 Corchorus olitorius HOM05D006335 ORTHO05D007617 9.7e-17 91.3 98 45.9
CARHR005880 Cardamine hirsuta HOM05D006335 ORTHO05D007617 3.7e-16 89.4 134 36.6
Lj1A685T55 Lonicera japonica HOM05D006335 ORTHO05D007617 3.7e-16 89.4 115 42.6
PGR142G3040 Punica granatum HOM05D006335 ORTHO05D007617 3.7e-16 89.4 95 46.3
TAR626G0568 Trochodendron aralioides HOM05D006335 ORTHO05D007617 4.8e-16 89.0 102 47.1
Gohir.A09G001600 Gossypium hirsutum HOM05D006335 ORTHO05D007617 6.3e-16 88.6 100 47.0
Solyc12g010850.1 Solanum lycopersicum HOM05D006335 ORTHO05D007617 6.3e-16 88.6 97 45.4
Sopen12g006210 Solanum pennellii HOM05D006335 ORTHO05D007617 6.3e-16 88.6 97 45.4
AT1G06320 Arabidopsis thaliana HOM05D006335 ORTHO05D007617 1.8e-15 87.0 113 38.9
AL1G16330 Arabidopsis lyrata HOM05D006335 ORTHO05D007617 3.1e-15 86.3 117 40.2
Carub.0001s0568 Capsella rubella HOM05D006335 ORTHO05D007617 3.1e-15 86.3 104 43.3
Eucgr.K01124 Eucalyptus grandis HOM05D006335 ORTHO05D007617 4.1e-15 85.9 118 41.5
TAR624G0615 Trochodendron aralioides HOM05D006335 ORTHO05D007617 5.3e-15 85.5 114 44.7
Thhalv10009758m.g Eutrema salsugineum HOM05D006335 ORTHO05D007617 7.0e-15 85.1 111 38.7
Sabra05G0153900 Salix brachista HOM05D006335 ORTHO05D007617 7.0e-15 85.1 105 43.8
SHI18965 Sapria himalayana HOM05D006335 ORTHO05D007617 9.1e-15 84.7 136 39.0
Sc05g0006750 Simmondsia chinensis HOM05D006335 ORTHO05D007617 9.1e-15 84.7 173 34.7
Nn4g25571 Nelumbo nucifera HOM05D006335 ORTHO05D007617 1.6e-14 84.0 99 43.4
BcaC07g36801 Brassica carinata HOM05D006335 ORTHO05D007617 1.7e-13 80.5 115 39.1
A08p36030 Brassica napus HOM05D006335 ORTHO05D007617 2.2e-13 80.1 121 37.2
BraA08t35509Z Brassica rapa HOM05D006335 ORTHO05D007617 2.9e-13 79.7 121 37.2
C08p02480 Brassica napus HOM05D006335 ORTHO05D007617 3.8e-13 79.3 115 38.3
Sp1g05110 Schrenkiella parvula HOM05D006335 ORTHO05D007617 3.8e-13 79.3 108 36.1
arahy.Tifrunner.gnm1.ann1.DF2I7I Arachis hypogaea HOM05D006335 ORTHO05D007617 5.0e-13 79.0 206 29.6
BolC8t47040H Brassica oleracea HOM05D006335 ORTHO05D007617 6.5e-13 78.6 130 35.4
Aqoxy2G02728 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 1.1e-12 77.8 95 42.1
THA.LOC104816084 Tarenaya hassleriana HOM05D006335 ORTHO05D007617 1.1e-12 77.8 112 42.9
Haze_13357 Corylus avellana HOM05D006335 ORTHO05D007617 1.5e-12 77.4 81 49.4
Dinv15181 Davidia involucrata HOM05D006335 ORTHO05D007617 1.9e-12 77.0 99 44.4
Aa31LG1G7320 Aethionema arabicum HOM05D006335 ORTHO05D007617 2.5e-12 76.6 165 33.9
Ciclev10016971m.g Citrus clementina HOM05D006335 ORTHO05D007617 2.5e-12 76.6 164 34.8
C08p51300 Brassica napus HOM05D006335 ORTHO05D007617 3.2e-12 76.3 101 37.6
BolC8t52656H Brassica oleracea HOM05D006335 ORTHO05D007617 3.2e-12 76.3 101 37.6
Hund07816 Selenicereus undatus HOM05D006335 ORTHO05D007617 4.2e-12 75.9 112 35.7
BcaC07g42074 Brassica carinata HOM05D006335 ORTHO05D007617 7.2e-12 75.1 114 35.1
A09p67040 Brassica napus HOM05D006335 ORTHO05D007617 9.4e-12 74.7 112 36.6
BraA09t42038Z Brassica rapa HOM05D006335 ORTHO05D007617 9.4e-12 74.7 112 36.6
Nitab4.5_0000537g0060 Nicotiana tabacum HOM05D006335 ORTHO05D007617 9.4e-12 74.7 113 37.2
Lsat_1_v5_gn_8_120600 Lactuca sativa HOM05D006335 ORTHO05D007617 1.2e-11 74.3 99 43.4
Dinv15448 Davidia involucrata HOM05D006335 ORTHO05D007617 1.6e-11 73.9 116 42.2
Potri.005G202500 Populus trichocarpa HOM05D006335 ORTHO05D007617 1.6e-11 73.9 100 44.0
GSVIVG01034999001 Vitis vinifera HOM05D006335 ORTHO05D007617 2.7e-11 73.2 113 38.9
BcaB03g13422 Brassica carinata HOM05D006335 ORTHO05D007617 4.7e-11 72.4 111 36.0
Glyma.12G127400 Glycine max HOM05D006335 ORTHO05D007617 1.0e-10 71.2 138 37.7
PSO170G4547 Papaver somniferum HOM05D006335 ORTHO05D007617 1.4e-10 70.9 104 43.3
Nitab4.5_0008326g0020 Nicotiana tabacum HOM05D006335 ORTHO05D007617 1.8e-10 70.5 115 36.5
TAR633G2592 Trochodendron aralioides HOM05D006335 ORTHO05D007617 1.8e-10 70.5 96 43.8
PGSC0003DMG400007858 Solanum tuberosum HOM05D006335 ORTHO05D007617 2.3e-10 70.1 97 39.2
FAN16G3721 Fragaria x ananassa HOM05D022579 ORTHO05D007617 1.2e-09 67.8 52 67.3
vmacro14418 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 1.2e-09 67.8 74 48.6
HanXRQChr16g0530371 Helianthus annuus HOM05D006335 ORTHO05D007617 1.5e-09 67.4 75 42.7
Zm00001eb014790 Zea mays HOM05D006335 ORTHO05D007617 1.5e-09 67.4 121 32.2
Aqoxy1G02076 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 2.0e-09 67.0 104 36.5
ECA246G1597 Erigeron canadensis HOM05D006335 ORTHO05D007617 2.0e-09 67.0 99 41.4
AUR62038933 Chenopodium quinoa HOM05D006335 ORTHO05D007617 5.7e-09 65.5 186 30.1
FAN02G3842 Fragaria x ananassa HOM05D006335 ORTHO05D007617 1.3e-08 64.3 184 31.0
AUR62039006 Chenopodium quinoa HOM05D006335 ORTHO05D007617 2.8e-08 63.2 101 34.7
Os03g0308600 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 2.8e-08 63.2 181 29.8
Thecc.04G299900 Theobroma cacao HOM05D006335 ORTHO05D007617 3.7e-08 62.8 95 38.9
ECA238G3583 Erigeron canadensis HOM05D006335 ORTHO05D007617 1.1e-07 61.2 72 43.1
Migut.D02221 Erythranthe guttata HOM05D006335 ORTHO05D007617 1.4e-07 60.8 100 40.0
PSO210G6959 Papaver somniferum HOM05D042607 ORTHO05D007617 1.2e-06 57.8 167 25.1
COL.COLO4_34622 Corchorus olitorius HOM05D006335 ORTHO05D007617 1.6e-06 57.4 87 39.1


User provided reference genes

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