Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.1e-118 429.9 208 100.0
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 9.1e-92 340.5 166 98.8
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 2.6e-86 322.4 238 70.2
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 2.6e-83 312.4 266 63.5
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 1.0e-82 310.5 266 63.2
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 2.9e-82 308.9 266 63.2
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 3.8e-82 308.5 266 62.8
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 3.2e-81 305.4 266 61.7
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 3.2e-81 305.4 266 62.4
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 8.8e-79 297.4 266 59.8
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 1.2e-78 297.0 266 59.8
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 1.5e-78 296.6 268 61.2
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 2.0e-78 296.2 266 59.4
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 2.6e-78 295.8 266 59.0
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 3.3e-78 295.4 266 59.4
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 9.7e-78 293.9 266 59.0
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 1.3e-77 293.5 266 59.0
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 1.7e-77 293.1 266 58.6
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 2.2e-77 292.7 266 59.8
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 2.2e-77 292.7 266 58.6
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 3.7e-77 292.0 266 59.0
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 4.8e-77 291.6 266 58.6
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 4.8e-77 291.6 266 58.6
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 8.2e-77 290.8 265 58.1
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 8.2e-77 290.8 266 58.3
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 1.8e-76 289.7 263 59.7
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 3.1e-76 288.9 234 62.8
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 5.3e-76 288.1 266 57.5
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 5.3e-76 288.1 266 58.3
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 7.0e-76 287.7 266 59.0
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.6e-75 286.6 266 57.1
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 1.6e-75 286.6 266 57.9
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 5.9e-75 284.6 266 57.5
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 7.7e-75 284.3 266 57.9
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 7.7e-75 284.3 266 56.8
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 1.0e-74 283.9 280 56.1
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 1.0e-74 283.9 266 57.1
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 1.3e-74 283.5 266 57.1
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 1.3e-74 283.5 266 56.8
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 2.9e-74 282.3 266 55.6
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 2.9e-74 282.3 266 57.5
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 3.8e-74 282.0 266 57.5
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 3.8e-74 282.0 266 57.5
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 3.8e-74 282.0 266 57.5
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 6.5e-74 281.2 266 55.6
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 6.5e-74 281.2 266 56.8
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 1.1e-73 280.4 201 71.1
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 1.1e-73 280.4 266 56.4
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 1.1e-73 280.4 266 56.8
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-73 280.0 266 57.1
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 1.9e-73 279.6 266 56.8
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 3.2e-73 278.9 266 56.8
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 3.2e-73 278.9 266 56.4
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 7.2e-73 277.7 266 56.4
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 1.6e-72 276.6 266 55.3
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 2.1e-72 276.2 266 55.3
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 2.1e-72 276.2 266 56.0
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 2.7e-72 275.8 266 54.5
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 8.0e-72 274.2 268 55.2
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 3.0e-71 272.3 266 53.4
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 8.8e-71 270.8 266 52.6
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 8.8e-71 270.8 240 57.9
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 1.2e-70 270.4 266 54.5
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 2.0e-70 269.6 266 53.4
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 2.0e-70 269.6 266 53.0
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 2.0e-70 269.6 266 53.0
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 2.0e-70 269.6 266 52.6
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 2.6e-70 269.2 266 53.0
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 2.6e-70 269.2 266 53.0
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 2.6e-70 269.2 266 52.6
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 3.4e-70 268.9 266 52.6
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 4.4e-70 268.5 266 53.0
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 4.4e-70 268.5 266 54.5
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 5.7e-70 268.1 266 53.0
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 5.7e-70 268.1 266 52.6
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 5.7e-70 268.1 266 52.6
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 5.7e-70 268.1 266 52.6
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 5.7e-70 268.1 266 52.6
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 5.7e-70 268.1 266 52.6
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 9.8e-70 267.3 266 53.4
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 2.2e-69 266.2 266 53.4
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 2.8e-69 265.8 266 52.6
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 2.8e-69 265.8 266 53.8
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.7e-69 265.4 201 67.2
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 3.7e-69 265.4 266 53.4
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 4.8e-69 265.0 279 52.0
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 4.8e-69 265.0 265 54.3
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 6.3e-69 264.6 266 51.9
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 8.3e-69 264.2 266 51.9
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 8.3e-69 264.2 266 52.3
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 8.3e-69 264.2 201 67.2
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 8.3e-69 264.2 266 51.5
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 1.1e-68 263.8 200 67.0
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.1e-68 263.8 266 53.0
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 1.4e-68 263.5 201 66.7
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 1.4e-68 263.5 201 66.7
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 1.8e-68 263.1 266 53.0
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.8e-68 263.1 266 54.1
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.4e-68 262.7 201 67.2
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 5.4e-68 261.5 202 63.9
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.7e-67 259.2 201 65.7
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.5e-67 258.8 202 65.3
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 4.5e-67 258.5 265 52.8
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 4.5e-67 258.5 266 52.3
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 2.3e-66 256.1 201 65.2
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 3.8e-66 255.4 201 63.7
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 3.8e-66 255.4 201 64.2
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.0e-66 255.0 184 69.0
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 8.6e-66 254.2 265 52.1
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 7.2e-65 251.1 266 51.1
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 9.5e-65 250.8 201 62.2
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 7.5e-62 241.1 235 56.6
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 9.8e-62 240.7 266 48.5
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 4.1e-60 235.3 244 55.7
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.9e-57 226.5 266 47.7
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 2.3e-50 203.0 222 53.6
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 9.5e-49 197.6 177 59.3
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 1.2e-48 197.2 261 44.1
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 4.4e-38 162.2 92 81.5
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.9e-37 158.7 95 76.8
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-34 150.6 142 56.3
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 2.4e-31 139.8 92 69.6
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 5.8e-22 108.6 63 79.4
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 7.1e-20 101.7 53 84.9
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 8.7e-18 94.7 53 77.4
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 1.3e-16 90.9 62 64.5
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 3.4e-06 56.2 25 96.0
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 5.8e-06 55.5 62 50.0
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 5.8e-06 55.5 31 71.0


User provided reference genes

Program Settings