Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1225500 Malus domestica HOM05D002504 ORTHO05D007332 5.0e-81 304.3 144 100.0
MD06G1189000 Malus domestica HOM05D002504 ORTHO05D007332 2.5e-24 115.9 62 80.6
MD14G1196000 Malus domestica HOM05D002504 ORTHO05D007332 9.6e-24 114.0 62 79.0
QL10p015763 Quercus lobata HOM05D002504 ORTHO05D007332 2.6e-21 105.9 61 75.4
Prupe.5G187700 Prunus persica HOM05D002504 ORTHO05D007332 4.4e-21 105.1 61 75.4
Cfa018980 Carpinus fangiana HOM05D002504 ORTHO05D007332 1.3e-20 103.6 61 72.1
Sc12g0006220 Simmondsia chinensis HOM05D002504 ORTHO05D007332 1.3e-20 103.6 61 75.4
CiPaw.11G039500 Carya illinoinensis HOM05D002504 ORTHO05D007332 2.9e-20 102.4 61 72.1
Haze_07366 Corylus avellana HOM05D002504 ORTHO05D007332 3.8e-20 102.1 61 70.5
HanXRQChr09g0271081 Helianthus annuus HOM05D002504 ORTHO05D007332 8.4e-20 100.9 61 73.8
Peaxi162Scf00013g00037 Petunia axillaris HOM05D002504 ORTHO05D007332 8.4e-20 100.9 62 67.7
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 1.1e-19 100.5 61 70.5
Thecc.03G080800 Theobroma cacao HOM05D002504 ORTHO05D007332 1.1e-19 100.5 61 70.5
Hma1.2p1_0002F.1_g003110 Hydrangea macrophylla HOM05D002504 ORTHO05D007332 1.4e-19 100.1 61 70.5
Hma1.2p1_0002F.1_g003120 Hydrangea macrophylla HOM05D002504 ORTHO05D007332 1.4e-19 100.1 61 70.5
RcHm_v2.0_Chr7g0180721 Rosa chinensis HOM05D002504 ORTHO05D007332 1.4e-19 100.1 61 68.9
Ca_21843_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007332 1.9e-19 99.8 61 67.2
DCAR_001954 Daucus carota HOM05D002504 ORTHO05D007332 2.4e-19 99.4 61 68.9
Duzib205G1248 Durio zibethinus HOM05D002504 ORTHO05D007332 2.4e-19 99.4 61 70.5
FAN04G0870 Fragaria x ananassa HOM05D002504 ORTHO05D007332 2.4e-19 99.4 61 67.2
Atru.chr9.2306 Acer truncatum HOM05D002504 ORTHO05D007332 3.2e-19 99.0 61 68.9
Cfa021306 Carpinus fangiana HOM05D002504 ORTHO05D007332 3.2e-19 99.0 61 68.9
Potri.015G064200 Populus trichocarpa HOM05D002504 ORTHO05D007332 3.2e-19 99.0 61 68.9
Rhsim08G0159000 Rhododendron simsii HOM05D002504 ORTHO05D007332 4.2e-19 98.6 62 66.1
arahy.Tifrunner.gnm1.ann1.0II3I9 Arachis hypogaea HOM05D002504 ORTHO05D007332 5.4e-19 98.2 61 67.2
arahy.Tifrunner.gnm1.ann1.77YH77 Arachis hypogaea HOM05D002504 ORTHO05D007332 5.4e-19 98.2 61 67.2
Dinv38674 Davidia involucrata HOM05D002504 ORTHO05D007332 5.4e-19 98.2 61 68.9
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 5.4e-19 98.2 61 68.9
Medtr4g107940 Medicago truncatula HOM05D002504 ORTHO05D007332 5.4e-19 98.2 61 67.2
Psat4g053760 Pisum sativum HOM05D002504 ORTHO05D007332 5.4e-19 98.2 61 68.9
THA.LOC104821429 Tarenaya hassleriana HOM05D002504 ORTHO05D007332 5.4e-19 98.2 61 70.5
MSTRG.11396 Avicennia marina HOM05D002504 ORTHO05D007332 7.1e-19 97.8 62 67.7
CSS0027489 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007332 7.1e-19 97.8 62 66.1
FvH4_5g15350 Fragaria vesca HOM05D002504 ORTHO05D007332 9.3e-19 97.4 61 65.6
FAN18G3736 Fragaria x ananassa HOM05D002504 ORTHO05D007332 9.3e-19 97.4 61 65.6
Gohir.A03G065300 Gossypium hirsutum HOM05D002504 ORTHO05D007332 9.3e-19 97.4 61 70.5
Gohir.D03G091600 Gossypium hirsutum HOM05D002504 ORTHO05D007332 9.3e-19 97.4 61 70.5
Gorai.003G095000 Gossypium raimondii HOM05D002504 ORTHO05D007332 9.3e-19 97.4 61 70.5
HanXRQChr02g0045291 Helianthus annuus HOM05D002504 ORTHO05D007332 9.3e-19 97.4 61 70.5
Nitab4.5_0007394g0020 Nicotiana tabacum HOM05D002504 ORTHO05D007332 9.3e-19 97.4 62 66.1
TPR.G28161 Trifolium pratense HOM05D002504 ORTHO05D007332 9.3e-19 97.4 61 65.6
TPR.G38417 Trifolium pratense HOM05D002504 ORTHO05D007332 9.3e-19 97.4 61 65.6
CANSAT01G1674 Cannabis sativa HOM05D002504 ORTHO05D007332 1.6e-18 96.7 61 67.2
FAN13G2486 Fragaria x ananassa HOM05D002504 ORTHO05D007332 1.6e-18 96.7 60 66.7
Lsat_1_v5_gn_4_107620 Lactuca sativa HOM05D002504 ORTHO05D007332 1.6e-18 96.7 61 70.5
CAN.G628.36 Capsicum annuum HOM05D002504 ORTHO05D007332 2.1e-18 96.3 62 64.5
Nitab4.5_0000269g0160 Nicotiana tabacum HOM05D002504 ORTHO05D007332 2.1e-18 96.3 62 64.5
Lsat_1_v5_gn_1_10981 Lactuca sativa HOM05D002504 ORTHO05D007332 2.7e-18 95.9 61 68.9
Hund09366 Selenicereus undatus HOM05D002504 ORTHO05D007332 2.7e-18 95.9 61 67.2
Glyma.05G029100 Glycine max HOM05D002504 ORTHO05D007332 3.5e-18 95.5 61 65.6
PSO017G0663 Papaver somniferum HOM05D002504 ORTHO05D007332 3.5e-18 95.5 61 63.9
Solyc06g071000.3 Solanum lycopersicum HOM05D002504 ORTHO05D007332 3.5e-18 95.5 62 64.5
Sopen06g027300 Solanum pennellii HOM05D002504 ORTHO05D007332 3.5e-18 95.5 62 64.5
PGSC0003DMG400033072 Solanum tuberosum HOM05D002504 ORTHO05D007332 3.5e-18 95.5 62 64.5
TWI15G0064 Tripterygium wilfordii HOM05D002504 ORTHO05D007332 3.5e-18 95.5 60 68.3
Thhalv10003935m.g Eutrema salsugineum HOM05D002504 ORTHO05D007332 4.6e-18 95.1 61 67.2
EL10Ac5g10953 Beta vulgaris HOM05D002504 ORTHO05D007332 6.0e-18 94.7 61 67.2
VMungo1215G3404 Vigna mungo HOM05D002504 ORTHO05D007332 6.0e-18 94.7 61 63.9
BcaB07g29846 Brassica carinata HOM05D002504 ORTHO05D007332 7.8e-18 94.4 61 65.6
BcaC03g18163 Brassica carinata HOM05D002504 ORTHO05D007332 7.8e-18 94.4 61 65.6
Cpa.g.sc17.219 Carica papaya HOM05D002504 ORTHO05D007332 7.8e-18 94.4 61 67.2
CsaV3_1G007880 Cucumis sativus L. HOM05D002504 ORTHO05D007332 7.8e-18 94.4 61 67.2
Glyma.17G097800 Glycine max HOM05D002504 ORTHO05D007332 7.8e-18 94.4 61 65.6
Phvul.003G192100 Phaseolus vulgaris HOM05D002504 ORTHO05D007332 7.8e-18 94.4 61 65.6
BcaB02g09655 Brassica carinata HOM05D002504 ORTHO05D007332 1.0e-17 94.0 61 63.9
Eucgr.B00436 Eucalyptus grandis HOM05D002504 ORTHO05D007332 1.0e-17 94.0 61 72.1
Lj9C460G15 Lonicera japonica HOM05D002504 ORTHO05D007332 1.0e-17 94.0 61 63.9
PGR083G0441 Punica granatum HOM05D002504 ORTHO05D007332 1.0e-17 94.0 61 63.9
Sp2g25700 Schrenkiella parvula HOM05D002504 ORTHO05D007332 1.0e-17 94.0 61 65.6
vmacro17514 Vaccinium macrocarpon HOM05D002504 ORTHO05D007332 1.0e-17 94.0 61 63.9
GSVIVG01008047001 Vitis vinifera HOM05D002504 ORTHO05D007332 1.0e-17 94.0 62 66.1
A02p42390 Brassica napus HOM05D002504 ORTHO05D007332 1.3e-17 93.6 59 67.8
CARHR276310 Cardamine hirsuta HOM05D002504 ORTHO05D007332 1.7e-17 93.2 61 67.2
Glyma.05G029200 Glycine max HOM05D002504 ORTHO05D007332 1.7e-17 93.2 61 62.3
Glyma.17G097700 Glycine max HOM05D002504 ORTHO05D007332 1.7e-17 93.2 61 62.3
Actinidia37649 Actinidia chinensis HOM05D002504 ORTHO05D007332 2.3e-17 92.8 62 64.5
BcaC01g02484 Brassica carinata HOM05D002504 ORTHO05D007332 2.3e-17 92.8 61 62.3
A06p29230 Brassica napus HOM05D002504 ORTHO05D007332 2.3e-17 92.8 61 62.3
C03p64300 Brassica napus HOM05D002504 ORTHO05D007332 2.3e-17 92.8 61 62.3
BolC3t18684H Brassica oleracea HOM05D002504 ORTHO05D007332 2.3e-17 92.8 61 62.3
BraA06t25879Z Brassica rapa HOM05D002504 ORTHO05D007332 2.3e-17 92.8 61 62.3
ECA232G1281 Erigeron canadensis HOM05D002504 ORTHO05D007332 2.3e-17 92.8 61 67.2
ClCG01G014440 Citrullus lanatus HOM05D002504 ORTHO05D007332 3.0e-17 92.4 61 65.6
AL8G39420 Arabidopsis lyrata HOM05D002504 ORTHO05D007332 3.9e-17 92.0 61 65.6
Carub.0008s2320 Capsella rubella HOM05D002504 ORTHO05D007332 3.9e-17 92.0 61 65.6
MELO3C002203.2 Cucumis melo HOM05D002504 ORTHO05D007332 3.9e-17 92.0 59 66.1
Sed0027525 Sechium edule HOM05D002504 ORTHO05D007332 3.9e-17 92.0 61 65.6
Actinidia04916 Actinidia chinensis HOM05D002504 ORTHO05D007332 5.1e-17 91.7 62 62.9
AT5G62530 Arabidopsis thaliana HOM05D002504 ORTHO05D007332 5.1e-17 91.7 61 65.6
Lj4g0024401 Lotus japonicus HOM05D002504 ORTHO05D007332 5.1e-17 91.7 62 64.5
PSO478G0883 Papaver somniferum HOM05D002504 ORTHO05D007332 5.1e-17 91.7 61 62.3
TAR622G0396 Trochodendron aralioides HOM05D002504 ORTHO05D007332 5.1e-17 91.7 61 63.9
HPP92_007639 Vanilla planifolia HOM05D002504 ORTHO05D007332 6.6e-17 91.3 61 65.6
Migut.M00130 Erythranthe guttata HOM05D002504 ORTHO05D007332 8.7e-17 90.9 62 66.1
Lalb_Chr13g0303401 Lupinus albus HOM05D002504 ORTHO05D007332 8.7e-17 90.9 62 61.3
SGA_v2.0_scaffold6G03145 Striga asiatica HOM05D002504 ORTHO05D007332 8.7e-17 90.9 62 64.5
Ciclev10019562m.g Citrus clementina HOM05D002504 ORTHO05D007332 1.1e-16 90.5 61 63.9
Cc04_g15410 Coffea canephora HOM05D002504 ORTHO05D007332 1.1e-16 90.5 94 43.6
BraA02t09170Z Brassica rapa HOM05D002504 ORTHO05D007332 1.5e-16 90.1 59 66.1
SalBow5G0936 Salvia bowleyana HOM05D002504 ORTHO05D007332 1.9e-16 89.7 62 61.3
SalBow5G1952 Salvia bowleyana HOM05D002504 ORTHO05D007332 1.9e-16 89.7 62 61.3
Aqoxy3G03293 Aquilegia oxysepala HOM05D002504 ORTHO05D007332 2.5e-16 89.4 61 63.9
AUR62008369 Chenopodium quinoa HOM05D002504 ORTHO05D007332 2.5e-16 89.4 60 65.0
AUR62021730 Chenopodium quinoa HOM05D002504 ORTHO05D007332 2.5e-16 89.4 60 65.0
Os05g0536400 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007332 2.5e-16 89.4 61 63.9
SGA_v2.0_scaffold25G10908 Striga asiatica HOM05D002504 ORTHO05D007332 2.5e-16 89.4 84 54.8
unitig_0.g2534 Utricularia gibba HOM05D002504 ORTHO05D007332 3.3e-16 89.0 62 59.7
Lalb_Chr07g0177901 Lupinus albus HOM05D002504 ORTHO05D007332 4.3e-16 88.6 61 62.3
Aa31LG11G1110 Aethionema arabicum HOM05D002504 ORTHO05D007332 9.6e-16 87.4 61 62.3
Rhsim12G0158400 Rhododendron simsii HOM05D002504 ORTHO05D007332 1.6e-15 86.7 61 60.7
MBI04_g05752_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007332 2.1e-15 86.3 60 58.3
ATR1120G185 Amborella trichopoda HOM05D002504 ORTHO05D007332 6.9e-14 81.3 61 57.4
CDE05G2125 Ceratophyllum demersum HOM05D002504 ORTHO05D007332 7.6e-13 77.8 62 50.0
Medtr1g051515 Medicago truncatula HOM05D002504 ORTHO05D007332 2.9e-12 75.9 44 75.0
SEGI_23766 Sequoiadendron giganteum HOM05D002504 ORTHO05D007332 3.2e-11 72.4 57 54.4
AagrBONN_evm.TU.Sc2ySwM_228.5522 Anthoceros agrestis HOM05D002504 ORTHO05D007332 6.0e-10 68.2 61 49.2
Pp3c5_4940 Physcomitrium patens HOM05D002504 ORTHO05D007332 1.5e-08 63.5 61 49.2
Mapoly0053s0041 Marchantia polymorpha HOM05D002504 ORTHO05D007332 5.6e-08 61.6 61 42.6
Cre12.g520350 Chlamydomonas reinhardtii HOM05D002504 ORTHO05D007332 1.3e-07 60.5 65 46.2
vmacro16565 Vaccinium macrocarpon HOM05D002504 ORTHO05D007332 1.3e-07 60.5 34 67.6
SMO118G0249 Selaginella moellendorffii HOM05D002504 ORTHO05D007332 6.2e-07 58.2 61 44.3
SHI03939 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-06 56.2 30 66.7
BolC2t12286H Brassica oleracea HOM05D002504 ORTHO05D007332 4.0e-06 55.5 28 75.0
C02p62290 Brassica napus HOM05D002504 ORTHO05D007332 6.9e-06 54.7 27 77.8
BcaC03g18158 Brassica carinata HOM05D002504 ORTHO05D007332 9.0e-06 54.3 26 80.8


User provided reference genes

Program Settings