Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 1.6e-146 523.1 332 100.0
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.9e-83 313.5 322 61.8
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 3.0e-73 279.6 322 55.0
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 6.8e-65 251.9 323 61.9
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 2.2e-55 220.3 323 48.6
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.4e-49 201.1 319 55.8
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 6.8e-49 198.7 321 55.1
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 8.9e-49 198.4 319 54.9
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.8e-48 195.7 319 55.2
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 4.9e-47 192.6 322 53.4
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 4.9e-47 192.6 153 75.2
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 7.0e-46 188.7 317 42.6
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.6e-45 187.6 321 48.9
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 2.3e-44 183.7 322 48.4
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 3.0e-44 183.3 322 52.8
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.5e-43 181.0 322 52.2
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 3.3e-43 179.9 322 52.8
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.6e-42 177.6 322 40.7
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.6e-42 177.6 333 39.3
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.1e-42 177.2 321 51.7
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 4.7e-42 176.0 312 39.4
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.4e-41 174.5 327 51.1
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 2.3e-41 173.7 322 48.4
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.3e-41 173.7 322 50.9
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.0e-41 172.9 333 39.6
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.2e-40 171.4 322 37.6
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.2e-40 171.4 325 49.5
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.5e-40 171.0 322 51.9
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 3.4e-40 169.9 321 48.6
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 2.2e-39 167.2 322 48.4
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.2e-39 167.2 321 49.2
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.1e-38 164.9 319 49.8
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.9e-38 164.1 331 50.2
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 3.2e-38 163.3 335 47.8
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 5.4e-38 162.5 322 44.7
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.2e-37 161.4 324 50.9
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.2e-37 161.4 323 48.6
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.7e-37 160.2 324 50.0
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 4.6e-37 159.5 347 48.1
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 7.8e-37 158.7 322 48.4
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 2.3e-36 157.1 315 48.9
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 6.6e-36 155.6 324 49.7
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 8.6e-36 155.2 321 48.6
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 1.5e-35 154.5 300 44.0
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.6e-34 151.0 340 47.1
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 2.1e-34 150.6 323 43.0
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 3.6e-34 149.8 322 41.6
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 4.7e-34 149.4 349 47.9
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 4.7e-34 149.4 314 35.4
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.4e-33 147.9 309 48.2
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.1e-33 146.7 320 47.8
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 6.8e-33 145.6 345 42.0
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 8.9e-33 145.2 309 48.5
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.2e-32 144.8 320 39.7
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 3.4e-32 143.3 322 41.6
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.9e-31 140.2 321 36.1
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.1e-30 138.3 327 43.7
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 2.4e-30 137.1 323 35.0
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 3.2e-30 136.7 324 37.0
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 5.4e-30 136.0 315 44.1
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 7.1e-30 135.6 319 46.1
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.6e-29 134.4 296 50.0
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.6e-29 132.9 324 46.9
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.0e-28 131.7 163 50.9
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.3e-28 131.3 322 37.9
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.7e-28 131.0 320 44.1
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 5.1e-28 129.4 259 40.2
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 6.6e-28 129.0 323 46.1
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 8.7e-28 128.6 259 53.7
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.2e-26 124.8 252 53.6
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 1.2e-26 124.8 333 46.8
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.2e-26 124.8 170 48.8
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 2.1e-26 124.0 322 39.1
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.8e-26 123.6 320 45.3
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 3.6e-26 123.2 323 42.1
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 4.7e-26 122.9 329 43.2
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 4.7e-26 122.9 329 43.2
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.1e-25 121.7 323 41.8
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.1e-25 121.7 323 41.8
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.1e-25 121.7 323 41.8
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.8e-25 120.9 324 39.2
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 3.1e-25 120.2 296 48.0
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 4.0e-25 119.8 318 40.6
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 5.3e-25 119.4 321 42.4
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 2.6e-24 117.1 341 36.1
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 2.6e-24 117.1 321 43.0
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.6e-24 117.1 322 43.5
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 3.4e-24 116.7 318 44.7
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 2.9e-23 113.6 324 43.2
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 8.4e-23 112.1 322 41.9
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 2.4e-22 110.5 324 40.4
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.4e-22 110.5 104 58.7
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 3.2e-22 110.2 322 44.4
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 3.2e-22 110.2 333 29.1
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 4.2e-22 109.8 323 40.9
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.6e-21 107.8 323 37.2
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.1e-21 107.5 315 30.5
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 7.8e-21 105.5 312 31.1
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.7e-20 104.4 325 32.9
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.3e-20 104.0 120 50.0
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 3.0e-20 103.6 350 38.3
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.1e-19 101.7 136 46.3
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.5e-19 101.3 298 28.9
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 9.6e-19 98.6 322 40.7
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 1.6e-18 97.8 321 35.5
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 4.8e-18 96.3 306 43.5
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 6.2e-18 95.9 307 39.1
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 8.1e-18 95.5 322 34.5
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 8.1e-18 95.5 116 51.7
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.8e-17 94.4 298 26.5
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 2.4e-17 94.0 169 40.8
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 2.4e-17 94.0 113 48.7
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 2.4e-17 94.0 113 48.7
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 5.3e-17 92.8 136 41.9
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.2e-16 91.7 329 34.0
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 1.5e-16 91.3 306 38.9
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 2.6e-16 90.5 132 43.9
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 5.8e-16 89.4 307 35.5
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 7.6e-16 89.0 113 46.9
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 2.2e-15 87.4 136 42.6
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 3.8e-15 86.7 328 28.7
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 6.4e-15 85.9 136 41.9
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 4.2e-14 83.2 206 35.0
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 2.1e-13 80.9 160 36.2
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 2.1e-13 80.9 324 28.1
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 2.1e-13 80.9 307 33.9
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 7.9e-13 79.0 329 25.8
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 1.8e-12 77.8 131 38.2
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 9.6e-11 72.0 111 41.4
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 2.8e-10 70.5 283 27.2
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 3.7e-10 70.1 119 40.3
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 8.1e-10 68.9 180 30.0
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 1.4e-09 68.2 163 30.7
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.2e-08 65.1 325 23.4
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.0e-08 64.3 138 34.1
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 2.6e-08 63.9 339 36.3
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 3.4e-08 63.5 242 26.4
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 7.6e-08 62.4 325 27.1
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 9.9e-08 62.0 152 32.9


User provided reference genes

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