Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 2.4e-68 262.3 162 100.0
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 1.1e-47 193.7 153 75.2
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.8e-47 193.0 152 83.6
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 8.5e-45 184.1 158 65.8
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 7.2e-36 154.5 157 56.7
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 4.7e-35 151.8 150 57.3
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 6.1e-35 151.4 157 54.8
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 3.3e-33 145.6 157 52.9
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 5.7e-33 144.8 157 52.9
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.1e-31 140.6 150 56.0
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.1e-31 140.6 150 56.0
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 9.1e-31 137.5 153 51.6
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 4.5e-30 135.2 145 53.8
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.9e-30 134.8 145 65.5
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 5.9e-30 134.8 152 51.3
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.0e-29 134.0 150 52.7
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.0e-29 134.0 150 52.7
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 2.2e-29 132.9 152 48.0
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.9e-29 132.5 134 67.9
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 5.0e-29 131.7 141 56.0
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.0e-29 131.7 150 52.0
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.1e-28 130.6 152 50.0
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 2.5e-28 129.4 152 47.4
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 2.5e-28 129.4 152 47.4
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 2.5e-28 129.4 152 47.4
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 4.2e-28 128.6 80 90.0
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 3.6e-27 125.6 152 46.1
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 4.7e-27 125.2 152 46.1
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 4.7e-27 125.2 150 48.0
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 8.0e-27 124.4 131 53.4
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.0e-26 124.0 156 47.4
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.0e-26 124.0 156 48.7
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.4e-26 123.6 154 47.4
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.4e-26 123.6 149 48.3
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 2.3e-26 122.9 154 46.8
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 4.0e-26 122.1 154 45.5
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.5e-25 120.2 150 50.0
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.6e-25 119.4 157 46.5
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 4.4e-25 118.6 131 52.7
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 5.7e-25 118.2 145 49.0
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 5.7e-25 118.2 126 54.8
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 7.5e-25 117.9 154 44.2
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 9.7e-25 117.5 152 45.4
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 9.7e-25 117.5 146 48.6
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.3e-24 117.1 156 48.7
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.2e-24 116.3 150 46.0
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 2.8e-24 115.9 150 48.7
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 3.7e-24 115.5 140 47.1
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 3.7e-24 115.5 150 48.0
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 6.3e-24 114.8 124 52.4
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 8.2e-24 114.4 123 62.6
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 1.1e-23 114.0 134 47.0
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.1e-23 114.0 150 46.0
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.1e-23 114.0 124 55.6
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 1.1e-23 114.0 155 47.1
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.1e-23 114.0 154 46.8
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.3e-23 111.7 125 54.4
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 5.3e-23 111.7 147 58.5
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.2e-22 110.5 150 44.7
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.6e-22 110.2 149 45.0
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 2.7e-22 109.4 149 43.6
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 2.7e-22 109.4 149 43.0
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 2.7e-22 109.4 150 54.0
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 3.5e-22 109.0 148 45.3
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 5.9e-22 108.2 146 45.9
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 2.9e-21 105.9 146 45.2
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.9e-21 105.9 112 54.5
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 6.5e-21 104.8 120 49.2
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 8.5e-21 104.4 118 52.5
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.1e-20 104.0 126 50.8
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.1e-20 104.0 93 59.1
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.1e-20 104.0 127 62.2
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.5e-20 103.6 86 64.0
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 4.2e-20 102.1 149 40.3
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 5.5e-20 101.7 128 47.7
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 7.2e-20 101.3 112 51.8
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 9.4e-20 100.9 123 44.7
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.2e-19 100.5 118 46.6
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 2.7e-19 99.4 118 49.2
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 2.7e-19 99.4 115 49.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 6.1e-19 98.2 125 48.8
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 8.0e-19 97.8 129 45.0
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 8.0e-19 97.8 159 39.6
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 8.0e-19 97.8 159 39.6
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 8.0e-19 97.8 143 43.4
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.0e-18 97.4 152 42.8
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.4e-18 97.1 149 43.0
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 4.0e-18 95.5 159 39.0
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 4.0e-18 95.5 148 43.2
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 4.0e-18 95.5 121 43.8
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 4.0e-18 95.5 151 37.1
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 5.2e-18 95.1 156 50.6
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 5.2e-18 95.1 121 44.6
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 8.8e-18 94.4 89 59.6
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 8.8e-18 94.4 89 60.7
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.5e-17 93.6 121 43.8
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 2.0e-17 93.2 108 50.9
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.0e-17 93.2 142 38.7
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.6e-17 92.8 86 58.1
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 3.4e-17 92.4 133 42.1
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.4e-17 92.0 151 36.4
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 4.4e-17 92.0 93 53.8
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 5.7e-17 91.7 151 38.4
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 9.8e-17 90.9 82 62.2
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.3e-16 90.5 88 59.1
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 4.8e-16 88.6 112 49.1
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 6.3e-16 88.2 88 54.5
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 8.3e-16 87.8 154 40.3
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.1e-15 87.4 84 58.3
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.8e-15 86.7 88 53.4
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 1.8e-15 86.7 115 45.2
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.8e-15 86.7 91 52.7
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.1e-15 85.5 91 50.5
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 5.4e-15 85.1 84 56.0
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 9.1e-15 84.3 130 35.4
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 9.1e-15 84.3 82 56.1
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.0e-14 83.2 142 33.8
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 3.5e-14 82.4 88 52.3
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 3.5e-14 82.4 150 32.0
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 3.8e-13 79.0 151 37.7
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.8e-13 79.0 153 32.0
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 5.5e-12 75.1 88 48.9
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 7.2e-12 74.7 90 46.7
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 9.5e-12 74.3 149 38.9
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 9.5e-12 74.3 150 45.3
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.2e-11 73.9 182 31.3
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 2.7e-11 72.8 118 39.8
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 2.3e-10 69.7 71 57.7
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 3.0e-10 69.3 88 47.7
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 3.0e-10 69.3 88 47.7
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 5.2e-10 68.6 87 44.8
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 5.2e-10 68.6 152 33.6
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 1.5e-09 67.0 88 47.7
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 2.8e-08 62.8 97 39.2
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 5.4e-07 58.5 84 40.5
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 7.7e-06 54.7 108 34.3


User provided reference genes

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