Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 4.2e-311 1070.5 517 100.0
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 4.3e-260 901.0 450 94.9
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 2.0e-249 865.5 453 90.5
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 3.9e-237 824.7 463 83.8
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 1.2e-233 813.1 445 85.6
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.9e-233 810.8 445 85.2
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 9.1e-226 786.9 461 81.3
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 6.1e-222 774.2 452 80.8
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 2.9e-216 755.4 441 81.0
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.8e-211 738.8 437 78.5
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 3.7e-211 738.4 448 77.9
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 7.0e-210 734.2 448 77.5
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.2e-210 733.8 438 79.2
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 2.0e-209 732.6 456 76.5
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 5.9e-209 731.1 435 78.9
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 6.6e-208 727.6 448 77.2
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 6.6e-208 727.6 463 76.2
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 9.5e-207 723.8 436 76.6
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 2.1e-206 722.6 437 76.2
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.6e-206 721.8 436 77.1
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 4.7e-206 721.5 448 77.0
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 4.7e-206 721.5 437 76.0
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 4.7e-206 721.5 454 75.3
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 6.1e-206 721.1 456 75.9
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.0e-205 720.3 441 77.6
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 4.0e-205 718.4 437 75.7
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 5.2e-205 718.0 443 77.4
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 5.2e-205 718.0 453 76.6
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 5.2e-205 718.0 467 74.9
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 8.9e-205 717.2 441 75.3
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.2e-204 716.8 444 75.5
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 2.0e-204 716.1 433 76.9
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 4.4e-204 714.9 439 76.3
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 9.8e-204 713.8 438 76.0
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 9.8e-204 713.8 436 75.2
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.7e-203 713.0 436 76.1
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 1.7e-203 713.0 466 74.5
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 2.2e-203 712.6 441 75.5
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 2.9e-203 712.2 446 76.9
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 4.9e-203 711.4 448 75.0
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.9e-203 711.4 457 75.9
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 6.4e-203 711.1 447 74.7
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 8.3e-203 710.7 441 75.5
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 8.3e-203 710.7 447 74.7
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 8.3e-203 710.7 460 75.0
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 1.1e-202 710.3 442 76.0
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.4e-202 709.9 436 76.6
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.8e-202 709.5 446 76.7
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 3.2e-202 708.8 440 77.3
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 4.1e-202 708.4 447 74.3
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.4e-202 708.0 435 75.9
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 5.4e-202 708.0 447 74.3
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 9.2e-202 707.2 461 74.0
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.2e-201 706.8 434 75.3
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.0e-201 706.1 460 74.1
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 3.5e-201 705.3 446 74.2
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 4.6e-201 704.9 431 76.3
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 5.9e-201 704.5 435 74.5
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.0e-200 703.7 460 73.7
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.3e-200 703.4 451 74.3
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.3e-200 703.4 448 75.2
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.3e-200 703.4 439 76.3
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.0e-200 701.4 451 74.3
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 5.0e-200 701.4 447 73.4
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 6.6e-200 701.0 436 75.5
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 6.6e-200 701.0 445 73.9
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 8.6e-200 700.7 460 74.1
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.5e-199 699.9 439 75.9
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.5e-199 699.9 455 73.0
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.9e-199 699.5 438 75.1
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 2.5e-199 699.1 434 75.6
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 3.3e-199 698.7 448 73.9
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 4.3e-199 698.4 435 75.9
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 5.6e-199 698.0 456 73.0
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 5.6e-199 698.0 456 72.6
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 9.5e-199 697.2 441 75.1
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.6e-198 696.4 434 75.3
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 2.1e-198 696.0 459 72.3
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 2.1e-198 696.0 479 71.6
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.8e-198 695.7 450 73.1
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 3.6e-198 695.3 459 72.3
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.2e-198 694.5 441 76.0
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 3.1e-197 692.2 451 72.7
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 3.1e-197 692.2 460 72.8
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 4.0e-197 691.8 437 73.5
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 4.0e-197 691.8 474 72.2
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 8.9e-197 690.6 451 72.5
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 1.2e-196 690.3 441 73.7
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.5e-196 689.9 451 72.7
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 2.0e-196 689.5 435 74.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 5.8e-196 688.0 447 72.9
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 9.8e-196 687.2 451 72.5
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.9e-195 685.6 430 73.3
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 6.4e-195 684.5 364 83.8
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 6.4e-195 684.5 443 73.4
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.1e-194 683.7 407 77.9
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.4e-194 683.3 364 83.8
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.9e-194 682.9 393 79.1
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.9e-194 682.9 510 65.5
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 3.2e-194 682.2 445 71.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.7e-193 679.1 438 72.6
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 2.5e-191 672.5 440 71.6
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 5.6e-191 671.4 430 74.4
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 8.1e-190 667.5 443 72.0
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 2.3e-189 666.0 435 72.4
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 3.1e-189 665.6 440 71.8
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 9.9e-188 660.6 431 72.4
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.3e-187 660.2 433 74.8
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 7.1e-186 654.4 443 70.9
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 2.1e-185 652.9 432 71.5
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.1e-183 647.1 428 72.9
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 4.7e-182 641.7 469 65.5
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 6.2e-182 641.3 376 76.9
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 4.9e-179 631.7 448 67.9
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 1.1e-178 630.6 442 68.3
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 7.3e-175 617.8 452 65.9
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.6e-169 600.1 322 84.2
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 5.1e-168 595.1 427 67.0
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.1e-167 594.0 324 82.4
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 4.3e-167 592.0 344 78.8
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 1.6e-158 563.5 370 67.6
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.1e-157 560.8 289 87.5
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.8e-157 560.1 406 65.8
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.4e-156 555.8 290 85.5
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 7.6e-156 554.7 344 76.5
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 1.3e-155 553.9 291 86.3
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.1e-149 534.3 396 68.7
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 2.3e-144 516.5 287 78.7
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 3.8e-139 499.2 266 85.0
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 1.9e-138 496.9 305 78.7
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.2e-137 494.2 334 63.5
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 2.6e-127 459.9 299 70.9
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.3e-126 457.6 314 69.4
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.1e-125 454.5 376 54.8
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 3.7e-118 429.5 285 66.7
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.3e-111 406.4 342 53.2
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.3e-96 357.1 270 63.3
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.8e-95 351.7 318 51.6
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.0e-87 327.4 332 46.7
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 4.6e-68 263.1 138 87.0
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.1e-65 254.2 179 63.7
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.1e-53 215.3 109 84.4
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.3e-50 203.8 119 76.5
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.6e-49 201.4 124 72.6
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.4e-47 193.7 138 62.3
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.6e-41 174.9 127 65.4
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.1e-32 144.1 85 76.5
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.0e-32 142.5 85 75.3
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 8.4e-30 136.0 78 74.4
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 2.8e-25 120.9 100 61.0
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 2.4e-16 91.3 130 45.4
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 3.4e-15 87.4 114 45.6
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 5.7e-10 70.1 52 63.5
BcaB01g02088 Brassica carinata HOM05D004680 ORTHO05D039099 2.9e-06 57.8 30 73.3


User provided reference genes

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