Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 2221.4 1147 100.0
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1855.9 1160 82.9
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1633.6 1151 75.0
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1564.7 1151 71.9
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1519.2 1135 70.9
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 0.0e+00 1457.2 1065 72.3
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1389.4 1148 64.2
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1379.0 1153 63.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1353.6 1041 70.1
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1353.2 1224 60.1
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1341.3 1167 62.2
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1340.9 1153 62.2
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1338.6 1153 61.8
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1337.8 1150 62.3
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1300.4 1155 60.2
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1297.7 1155 60.3
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1297.0 1149 59.3
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1296.2 1150 60.4
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1291.2 1153 60.3
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1282.3 1154 59.6
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1276.2 1152 59.2
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1267.3 1157 58.3
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1263.4 1152 58.9
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1258.4 1157 58.1
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1238.4 953 68.7
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1220.3 1147 57.6
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1216.4 1153 57.2
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1214.5 1152 56.1
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1203.7 1154 54.5
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1192.6 1156 55.7
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1190.6 1146 56.2
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1187.2 1216 53.1
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1185.6 1151 55.8
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1181.0 1152 55.6
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1180.2 1155 55.6
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1174.8 1152 55.1
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1174.5 1103 56.9
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1174.1 1151 55.5
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1171.8 1152 54.6
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1167.5 1152 53.9
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1165.2 1151 54.4
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1148.7 1150 55.3
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1146.7 1152 53.1
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1142.9 1146 53.9
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1142.5 1145 54.3
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1133.2 1103 54.8
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1127.9 1151 52.2
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1127.1 1152 51.7
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1125.2 1119 55.4
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1095.9 1156 51.5
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1085.5 1143 51.5
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1080.5 1143 51.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 1.6e-310 1069.7 1154 51.1
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 2.0e-310 1069.3 1150 51.2
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 2.7e-310 1068.9 1150 50.8
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.7e-310 1068.9 1154 50.1
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 2.8e-307 1058.9 1150 51.0
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.1e-303 1047.0 1021 54.2
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 2.3e-301 1039.3 1154 50.2
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.6e-299 1033.1 1133 49.5
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 3.7e-296 1021.9 1100 51.5
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 5.4e-295 1018.1 1151 48.0
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 7.0e-295 1017.7 1157 49.6
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 1.3e-293 1013.4 1231 47.7
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 5.0e-293 1011.5 1148 47.7
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 4.7e-291 1005.0 1096 51.2
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.1e-290 1003.8 1142 48.4
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 3.1e-290 1002.3 1143 47.9
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 5.2e-290 1001.5 1153 48.0
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 9.2e-287 990.7 1143 48.1
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 1.0e-285 987.3 1143 48.0
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 3.9e-285 985.3 1148 47.2
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.5e-284 982.6 1148 47.7
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 3.3e-284 982.2 1151 47.4
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 6.2e-283 978.0 1149 47.7
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 1.5e-281 973.4 1149 47.3
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 2.0e-281 973.0 1148 47.4
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.9e-276 956.4 1154 47.0
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 2.8e-275 952.6 1137 47.1
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.2e-273 947.2 1148 46.1
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 2.0e-273 946.4 1150 46.0
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.3e-272 943.7 1168 46.8
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.0e-269 934.1 1071 48.9
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.3e-264 917.1 1145 46.6
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 2.7e-262 909.4 1034 48.8
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 4.5e-257 892.1 1145 44.5
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.4e-250 870.5 933 52.5
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 1.2e-249 867.5 1067 45.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 3.9e-245 852.4 1162 43.4
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.4e-242 844.0 1140 44.3
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.6e-241 839.7 1168 42.0
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 8.2e-235 818.1 1150 43.3
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 5.5e-231 805.4 1163 40.8
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 2.6e-217 760.0 908 46.4
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.1e-165 587.0 1056 37.4
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 1.8e-141 508.1 1195 32.1
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 2.3e-136 491.1 1203 30.3
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.9e-135 488.0 645 42.9
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 3.2e-130 470.7 729 38.8
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.5e-127 461.8 445 57.1
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 2.6e-124 451.1 510 48.2
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.3e-117 426.8 437 52.9
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.5e-111 408.7 531 42.2
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 2.2e-107 394.8 1143 29.0
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.2e-104 383.6 456 48.2
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.7e-103 380.2 337 57.3
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.6e-95 354.8 437 48.1
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 9.1e-85 319.7 233 67.4
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.1e-69 269.6 232 60.3
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 9.2e-69 266.5 1285 24.4
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.2e-63 249.6 197 68.0
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 5.4e-61 240.7 315 48.6
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 7.8e-60 236.9 255 53.3
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 8.6e-59 233.4 350 42.6
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 4.9e-54 217.6 154 64.3
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.1e-52 212.2 176 58.0
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.6e-52 211.1 224 50.9
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.6e-44 186.0 184 56.0
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.9e-38 165.2 159 53.5
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.9e-37 162.5 116 71.6
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 1.9e-34 152.5 172 48.3
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.1e-29 136.7 134 56.7
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.4e-29 135.6 116 58.6
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 9.3e-29 133.7 123 53.7
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.5e-28 131.7 96 70.8
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.5e-28 131.7 96 70.8
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.6e-28 131.3 121 57.0
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 8.7e-27 127.1 180 43.9
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 9.6e-26 123.6 96 66.7
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.3e-25 123.2 121 52.1
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.6e-25 122.9 160 44.4
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 2.1e-25 122.5 147 45.6
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 2.1e-25 122.5 147 45.6
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 1.1e-24 120.2 263 34.6
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.9e-21 109.4 93 61.3
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 9.3e-21 107.1 1252 20.6
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 2.7e-20 105.5 143 42.0
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 6.2e-17 94.4 75 60.0
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 2.4e-16 92.4 64 53.1
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 3.4e-15 88.6 90 48.9
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 7.6e-15 87.4 63 65.1
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.3e-14 86.7 55 76.4
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 2.2e-14 85.9 143 33.6
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 4.2e-13 81.6 73 61.6
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 6.1e-12 77.8 58 60.3
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.3e-11 75.9 62 56.5
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 1.1e-10 73.6 102 41.2
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 5.7e-10 71.2 76 52.6
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 4.8e-09 68.2 92 39.1
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.5e-07 63.2 48 56.2


User provided reference genes

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