Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 9.3e-131 470.3 256 100.0
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 2.7e-98 362.5 256 76.2
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.0e-81 307.4 248 66.9
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 5.2e-81 305.1 248 66.5
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 9.8e-80 300.8 246 67.9
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.7e-79 300.1 254 65.4
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 4.9e-79 298.5 244 67.2
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.0e-77 291.6 281 59.8
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.1e-75 287.3 251 62.2
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 1.8e-73 280.0 231 70.1
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 2.3e-73 279.6 251 62.5
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.2e-72 277.3 249 62.2
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.5e-72 276.9 244 62.3
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 2.6e-72 276.2 245 62.0
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 7.5e-72 274.6 245 63.3
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.3e-71 273.9 237 63.7
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.7e-71 273.5 251 63.3
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.9e-71 272.7 244 61.9
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 3.7e-71 272.3 244 62.7
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 6.4e-71 271.6 228 65.4
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 8.3e-71 271.2 246 62.2
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 2.4e-70 269.6 230 61.7
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 4.1e-70 268.9 233 64.8
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 4.1e-70 268.9 247 60.3
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 9.2e-70 267.7 229 61.6
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 9.2e-70 267.7 232 63.8
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.2e-69 267.3 238 61.8
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.2e-69 267.3 234 62.0
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 2.1e-69 266.5 234 64.5
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 2.7e-69 266.2 234 63.7
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 2.7e-69 266.2 238 60.9
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 2.7e-69 266.2 238 60.9
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 3.5e-69 265.8 235 65.1
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 6.0e-69 265.0 229 63.8
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.3e-68 263.8 254 59.1
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 2.3e-68 263.1 237 61.6
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 3.0e-68 262.7 244 64.8
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 3.0e-68 262.7 227 63.4
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.9e-68 262.3 245 59.6
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 5.1e-68 261.9 235 61.7
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 6.6e-68 261.5 230 61.7
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 6.6e-68 261.5 230 61.7
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 6.6e-68 261.5 230 61.7
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 6.6e-68 261.5 242 59.1
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.6e-68 261.5 238 59.7
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 8.6e-68 261.2 238 61.8
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.9e-67 260.0 236 60.6
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 5.6e-67 258.5 230 60.9
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 5.6e-67 258.5 254 56.7
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 9.5e-67 257.7 228 61.8
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 9.5e-67 257.7 242 59.9
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.6e-66 256.9 238 59.7
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.8e-65 253.4 243 58.0
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.8e-65 253.4 234 62.4
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 4.0e-65 252.3 248 57.7
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 5.2e-65 251.9 215 66.5
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 8.9e-65 251.1 241 58.5
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 4.4e-64 248.8 275 53.1
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 5.8e-64 248.4 239 59.8
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 7.5e-64 248.1 237 60.3
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.3e-63 247.3 235 59.1
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.3e-63 247.3 244 59.4
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.3e-63 247.3 244 57.4
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.3e-63 247.3 247 56.3
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.7e-63 246.9 226 61.5
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 1.7e-63 246.9 245 58.8
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 6.4e-63 245.0 240 55.4
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.4e-62 243.8 244 59.4
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.4e-62 243.8 224 58.0
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 1.4e-62 243.8 240 56.7
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.9e-62 243.4 240 55.8
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 1.9e-62 243.4 223 63.7
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 3.2e-62 242.7 168 72.0
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 4.1e-62 242.3 233 57.1
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 4.1e-62 242.3 159 73.6
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 7.1e-62 241.5 223 61.0
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.2e-61 240.7 235 58.7
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.6e-61 240.4 165 73.9
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.6e-61 240.4 226 59.3
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.6e-61 240.4 165 72.7
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 2.1e-61 240.0 233 56.7
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 2.7e-61 239.6 229 58.1
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.6e-61 238.8 239 58.2
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 5.1e-60 235.3 234 57.7
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 6.6e-60 235.0 229 57.2
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 6.6e-60 235.0 229 57.2
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.5e-59 233.8 165 70.3
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.3e-59 232.6 240 55.0
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 5.6e-59 231.9 178 63.5
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 7.3e-59 231.5 291 50.2
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 2.8e-58 229.6 220 57.7
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 4.7e-58 228.8 173 67.1
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.1e-57 227.6 263 55.1
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 1.4e-57 227.3 225 54.2
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 6.8e-57 224.9 240 58.3
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 4.4e-56 222.2 234 56.0
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.1e-54 217.6 213 54.9
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 4.2e-54 215.7 178 61.2
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 7.1e-54 214.9 238 55.5
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 9.2e-54 214.5 202 57.4
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 2.1e-53 213.4 178 60.7
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 3.0e-52 209.5 143 74.8
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 5.1e-52 208.8 224 55.8
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 1.1e-51 207.6 132 73.5
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 8.4e-47 191.4 150 66.7
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.9e-46 190.3 243 54.3
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 4.6e-45 185.7 186 62.9
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 5.6e-43 178.7 136 63.2
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.6e-42 176.0 238 47.9
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 6.2e-42 175.3 242 45.9
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 1.4e-41 174.1 137 62.8
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 1.5e-40 170.6 169 53.3
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.2e-39 166.8 177 53.7
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 2.9e-39 166.4 178 53.9
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 6.4e-39 165.2 113 71.7
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.1e-37 160.2 134 57.5
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 3.5e-37 159.5 133 55.6
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 6.2e-34 148.7 97 79.4
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 5.3e-33 145.6 144 55.6
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.5e-30 136.7 182 51.6
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 3.2e-30 136.3 102 67.6
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 9.6e-27 124.8 78 76.9
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 1.5e-24 117.5 143 55.9
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.5e-19 100.9 67 73.1
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.1e-17 94.7 135 40.0
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 3.1e-17 93.2 72 63.9
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 5.9e-16 89.0 54 75.9
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.9e-14 84.0 112 47.3
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 5.7e-11 72.4 138 37.0
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.7e-10 69.7 122 43.4
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 2.4e-09 67.0 153 29.4
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 2.5e-06 57.0 46 63.0


User provided reference genes

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