Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 4.8e-244 847.4 436 100.0
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 4.9e-164 581.6 441 75.1
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.7e-161 573.2 433 73.0
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 6.2e-159 564.7 350 83.7
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 9.0e-150 534.3 512 61.5
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 2.5e-144 516.2 390 70.5
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 9.0e-142 507.7 352 74.7
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 2.0e-141 506.5 354 74.3
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 8.4e-140 501.1 355 74.6
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 1.1e-139 500.7 344 75.9
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 4.2e-139 498.8 389 70.2
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 7.1e-139 498.0 353 73.7
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 7.1e-139 498.0 344 75.6
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 2.7e-138 496.1 343 75.2
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 6.0e-138 495.0 336 75.0
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 7.9e-138 494.6 389 69.7
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 1.0e-137 494.2 358 74.0
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.3e-137 493.0 358 73.7
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 3.9e-137 492.3 364 71.4
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 6.7e-137 491.5 369 73.2
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 3.3e-136 489.2 332 77.4
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 2.1e-135 486.5 422 64.9
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 6.2e-135 485.0 335 74.9
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 8.2e-135 484.6 345 73.3
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 1.4e-134 483.8 360 71.1
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 1.8e-134 483.4 335 75.2
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 2.4e-134 483.0 335 74.9
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 3.1e-134 482.6 332 76.2
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 6.9e-134 481.5 331 75.5
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 6.9e-134 481.5 429 61.3
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 1.2e-133 480.7 336 74.1
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 1.2e-133 480.7 345 73.0
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 2.0e-133 479.9 337 74.5
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 3.4e-133 479.2 341 73.6
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 4.5e-133 478.8 323 77.1
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 5.8e-133 478.4 335 73.4
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 7.6e-133 478.0 324 76.2
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 1.0e-132 477.6 428 60.7
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 1.3e-132 477.2 337 73.3
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 1.7e-132 476.9 335 73.4
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 1.7e-132 476.9 356 71.3
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 2.9e-132 476.1 335 74.6
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 6.5e-132 474.9 290 83.1
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 1.1e-131 474.2 326 74.8
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 1.4e-131 473.8 427 61.6
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 3.2e-131 472.6 340 70.9
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 4.2e-131 472.2 345 68.7
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 1.2e-130 470.7 337 73.6
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 1.6e-130 470.3 333 73.6
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 1.6e-130 470.3 355 72.7
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 3.5e-130 469.2 397 61.2
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 4.6e-130 468.8 342 72.2
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 6.1e-130 468.4 299 77.3
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 1.0e-129 467.6 330 73.9
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 2.3e-129 466.5 364 68.7
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 6.7e-129 464.9 331 70.4
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 6.7e-129 464.9 333 72.4
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 6.7e-129 464.9 351 68.4
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 6.7e-129 464.9 385 67.3
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 8.7e-129 464.5 451 60.1
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 1.9e-128 463.4 331 70.7
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 1.3e-127 460.7 326 73.0
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 1.8e-126 456.8 297 77.4
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 5.3e-126 455.3 292 78.4
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.5e-125 453.8 385 64.2
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 3.4e-125 452.6 345 68.7
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 4.5e-125 452.2 390 65.1
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 5.9e-125 451.8 303 77.6
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 7.7e-125 451.4 340 68.5
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 1.7e-124 450.3 367 67.0
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 5.0e-124 448.7 351 64.7
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 5.5e-123 445.3 415 58.3
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 1.2e-122 444.1 383 63.2
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.6e-122 443.7 346 69.4
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 6.1e-122 441.8 330 69.4
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 2.3e-121 439.9 349 65.9
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 1.1e-120 437.6 275 80.7
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 1.5e-120 437.2 511 51.5
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 1.5e-120 437.2 283 78.8
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 1.5e-120 437.2 336 68.5
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 1.1e-118 431.0 370 63.0
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 9.1e-118 427.9 372 62.1
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 1.0e-116 424.5 276 76.4
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 6.1e-114 415.2 354 62.4
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 2.6e-112 409.8 351 70.4
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.4e-110 404.1 261 79.3
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 1.4e-110 404.1 315 67.3
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 3.1e-110 402.9 338 65.4
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.4e-104 382.5 384 53.1
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 5.9e-101 372.1 308 62.0
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 1.3e-100 370.9 364 59.9
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 2.2e-100 370.2 288 68.1
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 2.2e-100 370.2 339 59.0
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.1e-99 367.9 384 55.7
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 4.2e-99 365.9 242 75.2
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 2.2e-95 353.6 352 58.5
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 1.1e-94 351.3 385 51.9
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.2e-93 347.8 349 56.4
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 1.0e-89 334.7 281 65.1
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 8.8e-89 331.6 290 64.5
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 4.4e-88 329.3 263 69.2
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 4.5e-85 319.3 275 65.5
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 2.3e-81 307.0 313 50.2
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 4.9e-79 299.3 393 46.3
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 2.3e-76 290.4 293 56.7
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.3e-73 280.4 262 59.2
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 2.6e-72 276.9 199 71.4
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 5.0e-68 262.7 156 81.4
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 1.5e-64 251.1 157 75.8
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 4.0e-57 226.5 281 51.6
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 2.0e-56 224.2 144 75.0
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.9e-54 217.6 178 66.3
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 9.0e-41 172.2 146 63.0
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.0e-28 132.1 114 62.3
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.9e-27 127.9 114 60.5
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 8.1e-26 122.5 136 53.7
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 8.4e-23 112.5 107 55.1
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 3.5e-21 107.1 94 57.4
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 3.0e-20 104.0 61 83.6
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 1.3e-15 88.6 152 44.1
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 2.2e-15 87.8 70 64.3
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 4.2e-14 83.6 256 27.3
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 4.8e-10 70.1 35 94.3
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 1.7e-07 61.6 63 54.0


User provided reference genes

Program Settings