Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1920.2 990 100.0
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1806.6 990 93.5
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1804.3 990 93.1
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1709.9 990 87.5
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1700.3 990 86.9
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1700.3 990 87.0
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1593.6 990 81.7
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1558.1 918 85.9
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1555.8 990 80.9
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1544.3 990 79.7
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1538.9 990 78.8
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1538.1 990 79.1
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1536.9 993 78.9
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1531.2 992 78.3
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1530.8 993 77.9
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1523.1 969 80.1
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1517.7 990 77.7
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1516.9 991 77.9
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1516.1 1004 77.4
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1516.1 991 76.7
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1515.7 990 76.6
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1514.2 990 76.9
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1513.4 991 76.6
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1510.4 979 76.7
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1506.9 991 77.0
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1504.6 990 77.3
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1504.2 979 75.9
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1492.2 990 75.4
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1486.9 990 77.1
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1482.2 1015 76.0
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1481.1 991 76.1
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1480.7 991 75.8
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1480.3 990 77.4
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1476.8 992 75.8
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1475.3 987 74.8
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1472.6 991 74.5
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1468.8 990 76.1
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1468.0 992 75.4
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1467.2 992 74.3
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1464.9 990 74.9
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1463.7 991 74.6
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1463.4 1074 70.2
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1463.4 995 73.9
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1461.0 991 75.1
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1458.7 990 75.2
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1457.2 990 74.4
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1456.8 990 74.1
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1455.3 990 75.5
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1454.5 969 76.4
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1454.1 991 74.5
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1449.9 990 75.3
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 990 73.7
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1444.1 994 73.7
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1444.1 990 73.6
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1440.6 990 73.7
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1435.6 985 73.7
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1432.9 993 73.7
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1431.8 990 73.2
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1431.0 990 74.4
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1430.6 992 74.5
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1429.5 993 72.8
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1428.3 992 73.4
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1427.5 992 73.5
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1425.6 960 73.9
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1419.8 990 72.6
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1413.3 993 73.0
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1412.9 963 73.5
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1411.0 993 73.0
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1407.9 995 72.1
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1407.5 990 71.7
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1407.5 984 73.9
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1405.2 991 71.8
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 991 73.6
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1397.9 997 73.3
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1392.9 992 71.4
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1391.7 990 72.0
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1383.2 992 72.6
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1379.4 962 73.7
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1375.1 990 70.1
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1372.1 897 76.9
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1370.1 985 71.2
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1368.2 990 70.5
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1366.7 995 71.4
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1364.7 993 71.9
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1361.3 993 71.2
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1354.0 1025 69.5
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1352.4 1004 68.9
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1346.3 978 69.9
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1346.3 978 69.9
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1333.2 993 68.4
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1332.0 993 68.3
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1331.6 992 68.5
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1324.7 993 68.5
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1323.9 990 69.1
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1314.3 998 67.9
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1313.1 992 68.1
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1280.0 939 70.3
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1276.9 971 66.7
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1266.1 963 67.8
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1203.7 862 72.9
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1198.7 912 69.7
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1181.0 991 60.6
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1153.7 998 61.9
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1080.9 724 77.2
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 8.5e-297 1023.8 992 54.2
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 1.4e-294 1016.5 912 60.4
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 3.1e-291 1005.4 607 83.4
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.5e-280 969.1 1002 52.2
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 3.2e-280 968.8 1002 52.4
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 6.1e-279 964.5 1001 50.6
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 5.2e-278 961.4 999 51.0
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 2.6e-277 959.1 613 79.1
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 5.3e-275 951.4 1000 51.3
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-272 943.7 598 79.6
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 1.1e-264 917.1 842 58.3
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 4.3e-256 888.6 743 61.9
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 5.8e-245 851.7 983 47.0
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 3.3e-240 835.9 807 53.9
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 5.1e-209 732.3 1082 38.4
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 5.8e-205 718.8 911 43.0
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 8.8e-177 625.2 427 74.0
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 8.0e-146 522.3 315 81.0
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 1.2e-141 508.4 304 81.9
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 1.7e-140 504.6 356 70.5
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 4.1e-118 430.3 1195 29.1
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.7e-87 328.6 264 62.9
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.7e-87 328.6 264 62.9
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 9.3e-78 296.2 1077 26.6
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 9.7e-51 206.5 240 48.8
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 2.0e-43 182.2 932 23.5
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 2.0e-32 145.6 122 65.6
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 5.2e-28 131.0 145 49.7
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 2.0e-24 119.0 145 47.6
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.6e-21 109.4 85 64.7
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.1e-20 106.7 109 51.4
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.3e-15 89.0 64 67.2
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 1.3e-07 63.2 49 59.2
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 6.6e-07 60.8 45 73.3
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 6.6e-07 60.8 45 73.3


User provided reference genes

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