Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 6.3e-56 220.7 125 100.0
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 1.1e-52 209.9 125 96.0
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 3.0e-42 175.3 127 76.4
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 3.0e-42 175.3 127 76.4
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 1.3e-40 169.9 127 82.7
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.0e-37 160.2 119 73.9
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.1e-36 156.8 119 82.4
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 1.4e-34 149.8 109 81.7
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 8.9e-34 147.1 135 74.1
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 2.4e-31 139.0 128 71.9
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 7.8e-30 134.0 130 60.8
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 9.5e-28 127.1 140 57.9
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 8.0e-27 124.0 127 59.1
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 3.0e-26 122.1 129 56.6
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 5.2e-26 121.3 144 54.9
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 5.2e-26 121.3 140 57.9
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 5.2e-26 121.3 130 63.1
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 6.8e-26 120.9 137 51.1
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 8.9e-26 120.6 131 64.9
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.2e-25 120.2 137 62.0
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.5e-25 119.8 128 55.5
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 2.0e-25 119.4 134 56.0
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 2.6e-25 119.0 125 54.4
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 3.4e-25 118.6 130 59.2
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 7.5e-25 117.5 134 62.7
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 9.8e-25 117.1 129 62.0
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 8.3e-24 114.0 126 51.6
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.4e-23 113.2 135 59.3
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 2.4e-23 112.5 124 54.0
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 2.4e-23 112.5 124 60.5
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.6e-22 109.8 124 57.3
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 1.6e-22 109.8 115 67.8
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 3.5e-22 108.6 123 61.8
DCAR_016099 Daucus carota HOM05D002144 ORTHO05D002170 4.6e-22 108.2 119 63.9
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 6.0e-22 107.8 134 61.9
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 3.0e-21 105.5 135 53.3
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 3.9e-21 105.1 125 57.6
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 5.0e-21 104.8 125 54.4
PSO386G0162 Papaver somniferum HOM05D002144 ORTHO05D002170 5.0e-21 104.8 128 55.5
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 1.5e-20 103.2 73 75.3
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 1.9e-20 102.8 122 61.5
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 1.9e-20 102.8 130 55.4
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 1.9e-20 102.8 126 57.9
PSO223G0023 Papaver somniferum HOM05D002144 ORTHO05D002170 3.3e-20 102.1 128 51.6
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 9.5e-20 100.5 128 48.4
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 1.6e-19 99.8 139 54.0
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 1.6e-19 99.8 129 56.6
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 2.1e-19 99.4 138 44.9
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 6.2e-19 97.8 140 45.7
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 6.2e-19 97.8 128 47.7
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 6.2e-19 97.8 153 49.0
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 1.1e-18 97.1 125 48.8
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 1.4e-18 96.7 129 56.6
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 2.3e-18 95.9 129 54.3
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 4.0e-18 95.1 139 52.5
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 5.2e-18 94.7 125 57.6
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 8.9e-18 94.0 118 62.7
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 8.9e-18 94.0 107 62.6
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 1.2e-17 93.6 126 47.6
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.0e-17 92.8 122 49.2
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 3.4e-17 92.0 143 55.2
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 3.4e-17 92.0 130 51.5
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 4.4e-17 91.7 124 58.1
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 4.4e-17 91.7 115 60.0
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 2.9e-16 89.0 105 62.9
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 3.7e-16 88.6 112 48.2
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 4.9e-16 88.2 100 49.0
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 4.9e-16 88.2 126 48.4
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 1.4e-15 86.7 72 68.1
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 1.9e-15 86.3 130 43.8
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 3.2e-15 85.5 128 50.8
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 4.1e-15 85.1 147 49.0
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 5.4e-15 84.7 109 56.0
Eucgr.J02610 Eucalyptus grandis HOM05D002144 ORTHO05D002170 5.4e-15 84.7 134 42.5
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 5.4e-15 84.7 145 51.0
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 5.4e-15 84.7 145 51.0
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 7.0e-15 84.3 76 61.8
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.2e-14 83.6 75 61.3
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 2.1e-14 82.8 120 55.0
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 2.1e-14 82.8 133 42.9
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 3.5e-14 82.0 124 42.7
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 3.5e-14 82.0 130 42.3
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 1.0e-13 80.5 129 40.3
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 1.0e-13 80.5 105 47.6
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 1.3e-13 80.1 100 58.0
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 1.7e-13 79.7 130 50.8
CANSAT56G1652 Cannabis sativa HOM05D002144 ORTHO05D002170 3.0e-13 79.0 154 48.7
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 5.1e-13 78.2 130 39.2
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 6.6e-13 77.8 130 40.0
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 6.6e-13 77.8 133 43.6
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 8.6e-13 77.4 119 50.4
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 8.6e-13 77.4 57 64.9
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 8.6e-13 77.4 146 44.5
BcaB02g10863 Brassica carinata HOM05D002144 ORTHO05D002170 1.5e-12 76.6 131 40.5
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.5e-12 76.6 148 44.6
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.5e-12 76.6 75 58.7
ECA232G0343 Erigeron canadensis HOM05D003140 ORTHO05D003851 1.5e-12 76.6 135 46.7
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 1.5e-12 76.6 118 51.7
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.9e-12 76.3 119 51.3
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 2.5e-12 75.9 125 38.4
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 2.5e-12 75.9 100 58.0
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 3.3e-12 75.5 132 41.7
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 5.6e-12 74.7 55 65.5
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 7.3e-12 74.3 141 44.0
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 9.5e-12 73.9 118 50.8
Os09g0437500 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 9.5e-12 73.9 148 45.3
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 2.1e-11 72.8 110 42.7
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 2.1e-11 72.8 121 46.3
THA.LOC104822669 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 2.1e-11 72.8 124 41.9
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 6.2e-11 71.2 130 41.5
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 6.2e-11 71.2 130 41.5
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 4.0e-10 68.6 130 40.8
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 5.2e-10 68.2 134 40.3
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 6.8e-10 67.8 130 41.5
Sp1g40510 Schrenkiella parvula HOM05D001069 ORTHO05D002170 6.8e-10 67.8 76 51.3
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 6.8e-10 67.8 109 45.9
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.2e-09 67.0 84 52.4
MBI18_g06040_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 3.4e-09 65.5 119 37.8
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 3.4e-09 65.5 116 39.7
TPR.G16655 Trifolium pratense HOM05D002144 ORTHO05D002170 7.5e-09 64.3 126 46.0
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 4.9e-08 61.6 75 50.7
Lsat_1_v5_gn_1_37700 Lactuca sativa HOM05D002144 ORTHO05D002170 1.1e-07 60.5 76 44.7
ATR0796G073 Amborella trichopoda HOM05D002144 ORTHO05D002170 1.9e-07 59.7 74 48.6
CDE06G1752 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 1.9e-07 59.7 75 48.0
Nn4g25785 Nelumbo nucifera HOM05D002144 ORTHO05D002170 1.9e-07 59.7 121 42.1
Zm00001eb313950 Zea mays HOM05D002144 ORTHO05D002170 1.9e-07 59.7 74 50.0
unitig_0.g2318 Utricularia gibba HOM05D002144 ORTHO05D002170 2.4e-07 59.3 118 36.4
Nn3g21509 Nelumbo nucifera HOM05D002144 ORTHO05D002170 3.2e-07 58.9 87 42.5
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 3.2e-07 58.9 125 36.0
Sed0007798 Sechium edule HOM05D002144 ORTHO05D002170 4.1e-07 58.5 122 38.5
Os03g0342900 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 5.4e-07 58.2 117 44.4
CSS0005363 Camellia sinensis var. sinensis HOM05D002144 ORTHO05D002170 7.1e-07 57.8 124 36.3
Glyma.20G237200 Glycine max HOM05D002144 ORTHO05D002170 7.1e-07 57.8 116 38.8
Solyc01g099840.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 7.1e-07 57.8 128 38.3
Sopen00g009360 Solanum pennellii HOM05D002144 ORTHO05D002170 7.1e-07 57.8 128 38.3
Sopen01g043350 Solanum pennellii HOM05D002144 ORTHO05D002170 7.1e-07 57.8 128 38.3
C06p09860 Brassica napus HOM05D000815 ORTHO05D000636 9.2e-07 57.4 71 43.7
BolC6t36057H Brassica oleracea HOM05D000815 ORTHO05D000636 9.2e-07 57.4 71 43.7
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 9.2e-07 57.4 130 36.9
Haze_04128 Corylus avellana HOM05D002144 ORTHO05D002170 9.2e-07 57.4 135 34.1
AL3G26430 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 1.6e-06 56.6 29 82.8
PGSC0003DMG400024720 Solanum tuberosum HOM05D002144 ORTHO05D002170 1.6e-06 56.6 128 38.3
C01p50450 Brassica napus HOM05D002144 ORTHO05D002170 2.7e-06 55.8 76 48.7
BolC1t04997H Brassica oleracea HOM05D002144 ORTHO05D002170 2.7e-06 55.8 76 48.7
CANSAT56G3315 Cannabis sativa HOM05D002144 ORTHO05D002170 2.7e-06 55.8 89 41.6
Cfa006639 Carpinus fangiana HOM05D002144 ORTHO05D002170 2.7e-06 55.8 127 34.6
Glyma.10G151000 Glycine max HOM05D002144 ORTHO05D002170 2.7e-06 55.8 126 36.5
Hma1.2p1_1021F.1_g248660 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 2.7e-06 55.8 129 34.1
A06p00580 Brassica napus HOM05D000815 ORTHO05D000636 3.5e-06 55.5 71 42.3
BraA06t23272Z Brassica rapa HOM05D000815 ORTHO05D000636 3.5e-06 55.5 71 42.3
CAN.G1459.22 Capsicum annuum HOM05D002144 ORTHO05D002170 3.5e-06 55.5 128 36.7
CDE11G0597 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 3.5e-06 55.5 120 42.5
SMO335G0012 Selaginella moellendorffii HOM05D002144 ORTHO05D002170 3.5e-06 55.5 139 35.3
CARHR089060 Cardamine hirsuta HOM05D002144 ORTHO05D002170 4.6e-06 55.1 25 92.0
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 4.6e-06 55.1 89 43.8
Gorai.007G300900 Gossypium raimondii HOM05D002144 ORTHO05D002170 4.6e-06 55.1 128 35.2
Manes.09G171400 Manihot esculenta HOM05D002144 ORTHO05D002170 4.6e-06 55.1 127 33.9
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 4.6e-06 55.1 149 32.9
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 4.6e-06 55.1 119 35.3
Sp3g12440 Schrenkiella parvula HOM05D002144 ORTHO05D002170 4.6e-06 55.1 125 35.2
Hund21717 Selenicereus undatus HOM05D002144 ORTHO05D002170 4.6e-06 55.1 73 43.8
Thecc.05G314100 Theobroma cacao HOM05D002144 ORTHO05D002170 4.6e-06 55.1 128 35.9
TWI56G1061 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 4.6e-06 55.1 89 41.6
AT1G56220 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 6.0e-06 54.7 133 43.6
A01p39510 Brassica napus HOM05D002144 ORTHO05D002170 6.0e-06 54.7 75 49.3
BraA01t03992Z Brassica rapa HOM05D002144 ORTHO05D002170 6.0e-06 54.7 75 49.3
Zm00001eb016420 Zea mays HOM05D002144 ORTHO05D002170 6.0e-06 54.7 131 34.4
Carub.0002s0799 Capsella rubella HOM05D002144 ORTHO05D002170 7.8e-06 54.3 121 45.5
CDE05G2734 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 7.8e-06 54.3 83 44.6
Manes.08G116600 Manihot esculenta HOM05D002144 ORTHO05D002170 7.8e-06 54.3 128 35.9


User provided reference genes

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