Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 2.0e-255 885.2 426 100.0
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 9.8e-101 371.3 209 85.2
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 2.3e-89 333.6 209 77.0
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 5.4e-75 285.8 176 78.4
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 5.8e-69 265.8 211 60.2
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 9.9e-69 265.0 210 61.0
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.4e-67 260.4 210 59.5
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.5e-66 256.5 210 59.0
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 3.9e-65 253.1 211 59.7
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 7.4e-64 248.8 210 56.7
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 1.3e-63 248.1 212 61.8
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.1e-62 245.0 210 57.6
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-61 241.5 210 58.1
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 6.4e-60 235.7 214 53.7
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.1e-58 230.7 213 52.6
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 3.1e-54 216.9 212 55.2
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.0e-53 214.2 213 50.7
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.5e-53 213.0 237 46.8
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.5e-52 209.1 204 49.5
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.9e-48 197.6 158 62.0
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.9e-48 197.6 158 62.0
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 8.2e-47 192.2 212 48.6
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.5e-45 186.4 209 47.8
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.5e-45 186.4 209 47.8
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 3.8e-44 183.3 203 43.3
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.5e-44 182.2 223 45.7
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 1.1e-43 181.8 208 43.8
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-43 181.8 222 45.0
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.5e-43 180.6 201 42.8
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 2.5e-43 180.6 209 45.5
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.2e-43 179.9 215 45.1
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.5e-43 179.5 201 41.8
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 7.2e-43 179.1 207 44.9
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.8e-41 174.5 179 51.4
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.3e-41 174.1 206 41.7
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.1e-41 172.9 206 45.1
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 8.8e-41 172.2 207 40.6
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.1e-40 171.8 203 44.3
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.5e-40 171.4 211 44.1
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.0e-40 171.0 209 43.1
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.0e-40 171.0 146 55.5
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.5e-40 170.6 206 45.1
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 7.4e-40 169.1 207 39.1
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 9.7e-40 168.7 207 39.1
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 9.7e-40 168.7 207 39.1
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 2.2e-39 167.5 224 44.6
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 4.8e-39 166.4 211 42.7
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 4.8e-39 166.4 205 41.0
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 8.2e-39 165.6 204 44.1
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.1e-38 165.2 206 44.7
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 2.4e-38 164.1 205 41.0
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 3.1e-38 163.7 207 43.0
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.1e-38 162.2 214 43.9
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.2e-37 161.8 202 41.1
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 2.0e-37 161.0 204 42.2
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.6e-37 160.6 206 45.6
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.6e-37 160.6 205 41.0
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 2.6e-37 160.6 205 41.0
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 7.7e-37 159.1 173 43.4
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-35 154.5 219 41.1
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-35 154.5 136 53.7
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 4.2e-35 153.3 212 41.0
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.2e-35 153.3 218 42.7
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.4e-35 152.1 214 42.5
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.6e-34 151.4 207 39.1
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-33 148.3 215 41.4
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.8e-33 147.9 105 63.8
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-33 147.5 216 40.3
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.8e-33 145.6 214 42.1
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 8.8e-33 145.6 133 51.1
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 8.8e-33 145.6 133 51.1
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.0e-32 144.4 223 40.8
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.3e-32 143.7 177 42.4
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.3e-31 141.7 209 39.2
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.3e-31 141.7 209 39.2
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 1.7e-31 141.4 218 35.8
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 1.7e-31 141.4 133 48.9
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.8e-31 140.6 105 61.0
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.8e-31 139.8 214 40.2
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 6.3e-31 139.4 222 41.9
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.3e-31 139.4 169 46.2
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 8.2e-31 139.0 140 46.4
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 1.1e-30 138.7 218 34.4
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-30 138.7 187 44.4
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-30 138.7 159 41.5
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 1.8e-30 137.9 206 40.8
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.8e-30 137.9 140 45.7
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-30 137.9 197 40.6
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-30 137.5 207 39.6
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 2.4e-30 137.5 211 38.4
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 2.4e-30 137.5 202 36.6
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 3.1e-30 137.1 218 39.0
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 4.1e-30 136.7 127 49.6
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 5.3e-30 136.3 198 43.9
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 9.1e-30 135.6 127 49.6
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 9.1e-30 135.6 127 49.6
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.0e-29 134.4 216 40.7
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 4.5e-29 133.3 202 35.6
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.7e-29 132.5 215 36.7
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.0e-28 129.8 216 37.0
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.2e-27 127.1 163 42.3
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.6e-26 123.6 207 34.8
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 3.6e-26 123.6 208 36.1
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 6.1e-26 122.9 208 36.1
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.9e-25 120.2 167 38.9
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.9e-25 120.2 155 40.6
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 8.8e-25 119.0 201 36.3
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.8e-25 119.0 149 43.0
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.3e-24 117.1 152 40.1
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.7e-24 116.3 145 44.8
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 9.7e-24 115.5 175 39.4
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 2.8e-23 114.0 216 32.9
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 6.3e-23 112.8 175 39.4
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.4e-22 110.9 74 60.8
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-22 110.2 205 38.0
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 5.3e-22 109.8 205 38.0
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-21 108.2 215 33.0
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 1.6e-21 108.2 201 34.8
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.9e-21 106.3 127 42.5
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 7.7e-21 105.9 209 32.1
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 7.7e-21 105.9 208 34.6
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.5e-20 102.4 147 40.1
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.5e-19 100.9 94 50.0
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 7.2e-19 99.4 216 32.4
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-18 97.8 111 44.1
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-18 97.8 130 43.1
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 2.7e-18 97.4 217 30.0
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 1.8e-17 94.7 207 33.8
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 8.8e-17 92.4 222 32.0
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 8.8e-17 92.4 178 33.1
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 1.5e-16 91.7 218 31.2
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.5e-16 91.7 96 51.0
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 4.4e-16 90.1 227 27.3
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-15 88.2 149 38.9
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 2.8e-15 87.4 155 37.4
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.8e-15 87.4 219 30.1
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 2.8e-15 87.4 226 31.4
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.4e-14 83.2 136 34.6
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 9.1e-14 82.4 109 42.2
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.1e-10 69.7 75 48.0
Duzib128G1829 Durio zibethinus HOM05D014226 ORTHO05D186200 3.4e-08 63.9 129 34.1
AUR62014648 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-07 61.6 61 50.8
Sed0001119 Sechium edule HOM05D004865 ORTHO05D005949 8.3e-07 59.3 169 29.6
Ah.02g129530 Amaranthus hybridus HOM05D036023 ORTHO05D031012 1.8e-06 58.2 151 31.1
ClCG03G010280 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.8e-06 58.2 52 57.7


User provided reference genes

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