Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 2884.7 1498 100.0
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 2408.3 1477 83.7
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 2265.3 1423 81.1
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 2201.0 1419 78.9
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 2188.7 1476 77.2
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 2182.1 1490 76.4
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1992.6 1509 68.7
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1930.6 1504 67.7
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1925.6 1486 68.4
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1864.0 1523 64.5
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1862.0 1522 64.8
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1858.6 1492 65.9
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1848.9 1414 68.0
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1815.4 1509 64.0
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1813.1 1488 64.3
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1803.1 1482 64.9
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1799.3 1496 63.9
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1782.7 1517 62.6
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1733.4 1445 63.3
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1729.1 1445 63.4
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1723.4 1525 60.2
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1722.6 1352 66.6
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1692.6 1408 63.8
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1656.3 1498 59.7
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1649.0 1547 57.6
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1630.5 1452 60.2
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1629.0 1520 58.1
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1600.9 1438 59.0
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1593.6 1496 57.2
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1588.9 1519 55.9
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1584.3 1529 56.7
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1582.0 1496 56.8
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1572.8 1518 56.8
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1572.8 1521 56.7
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1565.4 1457 58.8
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1558.5 1448 58.3
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1552.7 1535 55.7
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1544.6 1456 58.4
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1543.9 1443 58.4
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1541.9 1231 65.2
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1538.1 1443 58.2
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1531.2 1466 57.2
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1529.6 1479 57.2
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1521.1 1508 56.7
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1520.4 1450 57.4
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1516.5 1425 56.5
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1506.1 1473 55.5
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1502.3 1459 56.6
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1501.9 1494 54.2
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1476.5 1549 52.9
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1432.2 1561 52.3
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1414.8 1551 51.5
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1385.2 1345 57.2
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1347.8 1334 55.8
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1338.6 1500 51.7
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1161.7 967 63.5
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1127.9 967 62.3
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 0.0e+00 1125.5 1225 52.5
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 1.6e-307 1060.1 1307 47.1
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 1.4e-306 1057.0 827 68.6
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.3e-301 1040.4 911 60.3
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 4.3e-300 1035.4 1225 46.4
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 5.4e-287 991.9 1507 39.7
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 3.3e-284 982.6 1470 40.7
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 4.1e-279 965.7 1061 49.9
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 2.0e-220 770.8 547 74.2
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 5.5e-215 752.7 1188 39.0
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 2.2e-203 714.1 737 53.2
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 3.5e-201 706.8 649 58.1
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 1.5e-188 664.8 535 65.2
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.4e-162 578.6 739 45.6
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 1.9e-159 568.2 980 36.5
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.1e-153 548.1 407 69.0
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 3.2e-138 497.7 717 42.4
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 3.3e-74 285.0 250 60.0
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.0e-72 280.0 205 68.3
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.6e-60 239.6 311 47.3
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.1e-56 226.9 181 61.9
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-51 209.9 234 44.9
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 5.8e-47 194.5 205 51.2
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.7e-46 193.0 268 45.9
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 6.4e-46 191.0 143 67.1
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 6.0e-44 184.5 122 75.4
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 1.7e-43 183.0 155 59.4
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 5.1e-43 181.4 149 65.1
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 5.6e-34 151.4 208 40.4
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 8.1e-25 120.9 121 56.2
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.1e-24 120.6 197 41.6
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 5.8e-23 114.8 112 47.3
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 3.8e-22 112.1 112 46.4
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 3.8e-22 112.1 112 46.4
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 8.4e-22 110.9 133 48.9
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 8.7e-19 100.9 216 34.3
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 8.2e-17 94.4 84 58.3
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 3.1e-16 92.4 69 65.2
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 2.6e-15 89.4 296 25.0
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 4.6e-12 78.6 50 78.0
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 1.8e-11 76.6 113 39.8
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 1.4e-08 67.0 181 27.1
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 2.4e-08 66.2 39 79.5
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 6.9e-08 64.7 121 38.8
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 5.0e-06 58.5 47 61.7


User provided reference genes

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