Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 9.2e-136 486.9 245 100.0
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 9.1e-75 284.3 159 94.3
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 6.5e-57 224.9 159 78.6
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 2.7e-42 176.4 161 62.7
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 1.2e-39 167.5 165 58.8
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 8.3e-36 154.8 165 55.8
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 3.2e-35 152.9 165 55.8
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 5.4e-35 152.1 165 55.2
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.0e-34 150.2 165 54.5
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 3.5e-34 149.4 165 53.9
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 3.8e-20 102.8 188 38.8
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 7.8e-18 95.1 160 41.2
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 3.0e-17 93.2 163 42.3
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.5e-16 90.9 232 35.3
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 1.1e-14 84.7 161 39.1
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.8e-14 84.0 166 42.2
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 6.9e-14 82.0 125 41.6
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 9.0e-14 81.6 160 36.9
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 2.0e-13 80.5 176 38.1
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 2.4e-11 73.6 116 41.4
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 3.2e-11 73.2 162 34.6
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 4.2e-11 72.8 142 37.3
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 4.2e-11 72.8 164 38.4
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 5.4e-11 72.4 103 43.7
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 7.1e-11 72.0 168 36.9
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 9.3e-11 71.6 173 33.5
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 1.2e-10 71.2 137 37.2
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 2.7e-10 70.1 163 35.0
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 3.5e-10 69.7 167 32.9
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.3e-09 67.8 65 60.0
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.3e-09 67.8 65 60.0
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 2.3e-09 67.0 91 46.2
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 3.0e-09 66.6 128 37.5
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 3.9e-09 66.2 158 36.7
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 1.5e-08 64.3 165 36.4
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 1.9e-08 63.9 92 42.4
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 1.9e-08 63.9 130 39.2
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 1.9e-08 63.9 88 44.3
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.9e-08 63.9 164 36.0
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.5e-08 63.5 128 39.1
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 2.5e-08 63.5 153 34.0
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 2.5e-08 63.5 82 46.3
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 5.6e-08 62.4 67 50.7
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 7.3e-08 62.0 64 56.2
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.3e-07 61.2 63 52.4
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.6e-07 60.8 88 46.6
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.6e-07 60.8 65 52.3
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 2.1e-07 60.5 85 45.9
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 2.8e-07 60.1 101 43.6
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.8e-07 60.1 108 37.0
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 4.8e-07 59.3 175 34.3
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 6.2e-07 58.9 167 33.5
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 1.1e-06 58.2 83 45.8
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 1.4e-06 57.8 58 50.0
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 1.4e-06 57.8 61 50.8
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 2.4e-06 57.0 73 43.8
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 2.4e-06 57.0 143 32.9
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 3.1e-06 56.6 58 50.0
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 4.0e-06 56.2 86 41.9
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 5.3e-06 55.8 58 48.3
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 5.3e-06 55.8 58 48.3
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 5.3e-06 55.8 86 40.7
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 5.3e-06 55.8 105 38.1
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 9.0e-06 55.1 80 38.8
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 9.0e-06 55.1 167 31.7
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 9.0e-06 55.1 161 32.3


User provided reference genes

Program Settings