Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 0.0e+00 2421.7 1371 100.0
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 0.0e+00 1986.1 1382 85.2
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 0.0e+00 1605.9 1420 71.3
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 0.0e+00 1252.7 1395 57.6
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 0.0e+00 1242.6 1394 58.4
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 0.0e+00 1229.5 1395 58.4
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 0.0e+00 1217.2 1400 58.2
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 0.0e+00 1209.5 1389 57.8
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 0.0e+00 1177.9 1390 57.0
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 4.5e-248 862.4 1448 41.7
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 3.5e-232 809.7 1413 43.4
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 8.6e-231 805.1 1478 40.8
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 6.4e-218 762.3 1455 39.4
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 1.6e-213 747.7 1381 41.1
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 8.3e-210 735.3 1406 38.8
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 8.6e-207 725.3 1432 38.0
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 1.7e-202 711.1 1413 38.5
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 9.6e-190 668.7 1412 36.6
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 3.8e-186 656.8 1393 36.2
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.3e-178 631.7 1406 36.0
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 4.2e-177 626.7 1420 35.1
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 2.1e-176 624.4 1458 35.7
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 8.7e-175 619.0 1284 35.4
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 5.6e-174 616.3 1407 36.2
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 3.5e-168 597.0 1441 35.4
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 4.6e-168 596.7 1429 35.3
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 1.3e-167 595.1 1474 34.7
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 4.6e-160 570.1 1420 36.4
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 3.9e-159 567.0 1517 33.7
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 5.1e-159 566.6 1412 34.5
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 4.3e-158 563.5 1453 33.4
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 1.5e-155 555.1 1404 34.3
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 5.1e-151 540.0 1396 33.7
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 4.4e-150 537.0 1381 32.8
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 6.3e-149 533.1 1381 32.8
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 1.2e-144 518.8 1411 32.7
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 6.7e-143 513.1 1539 32.2
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 1.1e-142 512.3 1420 32.4
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 2.2e-141 508.1 1381 33.7
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.8e-141 506.9 1391 33.2
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.8e-141 506.9 1391 33.2
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 3.5e-131 474.2 963 35.7
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 8.5e-130 469.5 1269 32.4
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 3.2e-129 467.6 1396 38.1
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 8.0e-128 463.0 1400 31.8
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 3.8e-122 444.1 1441 31.0
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 3.8e-122 444.1 1387 30.4
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 9.8e-118 429.5 1438 30.3
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 1.3e-117 429.1 1419 30.0
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 8.3e-117 426.4 1413 29.4
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.2e-115 422.5 1244 29.7
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 2.7e-115 421.4 1406 30.2
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 8.6e-114 416.4 1375 31.2
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 4.1e-108 397.5 1426 30.6
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 5.4e-108 397.1 1397 29.0
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 2.7e-107 394.8 1442 29.1
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 6.0e-107 393.7 1386 29.5
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 5.0e-106 390.6 1370 29.0
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 1.2e-104 386.0 1416 28.7
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 1.6e-104 385.6 1398 28.5
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 6.2e-104 383.6 1400 28.7
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 5.2e-103 380.6 1411 29.1
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 4.4e-102 377.5 1392 28.7
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 3.7e-101 374.4 1396 27.4
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 3.7e-101 374.4 1396 27.4
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.1e-100 370.9 970 32.3
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 3.5e-99 367.9 1394 27.3
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 4.6e-99 367.5 1421 28.1
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 3.0e-98 364.8 974 31.9
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 5.1e-98 364.0 1149 30.8
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 6.6e-98 363.6 1378 28.5
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.9e-97 362.1 1255 29.4
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 2.8e-96 358.2 1389 28.9
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 8.1e-96 356.7 1400 27.3
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 5.2e-95 354.0 474 46.4
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 7.6e-94 350.1 472 44.5
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.3e-93 349.4 719 40.1
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 1.4e-92 345.9 1386 27.3
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 1.6e-91 342.4 1587 27.3
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 2.1e-91 342.0 1376 27.3
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 1.0e-90 339.7 1409 27.7
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 3.0e-90 338.2 1406 27.8
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 5.1e-90 337.4 1415 28.4
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 6.6e-90 337.0 1434 27.3
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 6.2e-88 330.5 481 42.6
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 7.6e-86 323.6 517 40.0
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 1.3e-85 322.8 1380 27.8
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 4.9e-85 320.9 343 51.3
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.1e-83 315.5 612 35.6
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 2.7e-83 315.1 508 37.4
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 3.3e-81 308.1 481 41.0
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 4.3e-81 307.8 1455 26.1
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 2.4e-76 292.0 1302 27.0
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 1.7e-74 285.8 159 94.3
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 8.7e-74 283.5 1398 25.6
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 4.3e-73 281.2 1473 25.6
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 8.1e-72 276.9 1446 28.8
MD09G1132300 Malus domestica HOM05D005171 ORTHO05D006343 3.1e-71 275.0 188 75.0
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.4e-68 265.4 1412 25.7
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 9.6e-65 253.4 1428 26.8
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 6.2e-64 250.8 1414 25.3
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.7e-61 242.7 540 33.7
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.4e-60 239.6 281 49.8
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 1.8e-58 232.6 1379 24.4
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 5.1e-58 231.1 848 28.2
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 3.4e-54 218.4 513 34.3
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 2.9e-53 215.3 316 40.2
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 1.6e-51 209.5 1571 24.7
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.3e-50 206.5 269 43.5
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 9.0e-47 193.7 1377 23.1
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.2e-46 193.4 343 42.0
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 1.2e-46 193.4 1410 24.4
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 2.2e-45 189.1 1385 22.7
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 8.8e-42 177.2 291 47.1
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.8e-39 169.5 297 42.4
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 8.5e-37 160.6 151 55.6
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 6.7e-34 151.0 242 44.2
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 3.1e-31 142.1 148 45.9
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 6.1e-27 127.9 156 41.7
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 8.2e-24 117.5 128 49.2
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 7.0e-23 114.4 139 56.8
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 5.9e-22 111.3 136 57.4
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 5.9e-22 111.3 329 32.2
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 7.7e-22 110.9 123 49.6
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 2.9e-21 109.0 347 32.3
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.7e-16 92.0 131 47.3
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 4.1e-15 88.6 88 50.0
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.6e-14 86.7 128 46.1
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 3.5e-14 85.5 268 32.5
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.0e-13 84.0 519 25.8
CDE02G3322 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 2.9e-13 82.4 112 45.5
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.2e-11 77.0 119 37.8
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 1.4e-10 73.6 115 42.6
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 3.4e-09 68.9 82 36.6
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 4.1e-07 62.0 113 40.7
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.2e-06 60.5 71 52.1
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.6e-06 60.1 81 44.4
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 2.0e-06 59.7 204 29.4


User provided reference genes

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