Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 2.7e-261 904.8 467 100.0
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.3e-196 689.1 442 75.1
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 1.2e-195 686.8 439 75.4
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 3.4e-195 685.3 441 77.1
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.2e-194 682.6 439 74.9
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.7e-194 681.8 439 74.9
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 1.0e-191 673.7 374 88.2
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 2.8e-189 665.6 448 75.7
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 4.2e-169 598.6 442 70.6
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 7.8e-168 594.3 438 68.3
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 2.3e-167 592.8 429 69.2
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.2e-162 576.2 434 66.4
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 6.4e-162 574.7 433 67.4
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.1e-161 573.9 436 66.3
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 1.6e-160 570.1 434 67.1
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 3.5e-160 568.9 440 64.3
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 3.5e-160 568.9 434 66.1
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 6.0e-160 568.2 442 64.3
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 3.0e-159 565.8 422 64.5
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 3.9e-159 565.5 429 66.2
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 5.1e-159 565.1 431 65.9
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 6.6e-159 564.7 429 65.3
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 1.1e-158 563.9 432 66.4
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 1.1e-158 563.9 427 65.6
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 1.5e-158 563.5 435 65.1
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 5.6e-158 561.6 430 64.0
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 5.6e-158 561.6 426 65.5
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 9.6e-158 560.8 435 64.6
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 4.8e-157 558.5 426 65.3
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.2e-157 558.1 427 64.9
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 8.1e-157 557.8 415 66.5
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 5.3e-156 555.1 427 64.6
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 2.6e-155 552.7 436 63.1
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 4.5e-155 552.0 427 64.4
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 9.9e-155 550.8 429 63.9
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 2.9e-154 549.3 445 61.6
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 4.9e-154 548.5 435 60.9
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 6.4e-154 548.1 445 61.6
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 1.1e-153 547.4 448 62.1
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 1.1e-153 547.4 448 62.1
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 1.9e-153 546.6 425 65.4
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 1.9e-153 546.6 441 63.0
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 4.2e-153 545.4 445 61.1
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 5.4e-153 545.0 445 61.1
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 9.3e-153 544.3 418 62.4
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 6.0e-152 541.6 431 64.5
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 6.0e-152 541.6 434 62.9
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 7.9e-152 541.2 428 63.8
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 7.9e-152 541.2 429 65.0
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 3.3e-150 535.8 450 60.7
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 4.3e-150 535.4 456 62.5
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 5.6e-150 535.0 413 64.2
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 2.8e-149 532.7 420 62.9
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 3.7e-149 532.3 418 61.5
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 1.4e-148 530.4 444 59.7
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 2.6e-147 526.2 441 60.1
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 1.3e-146 523.9 463 58.5
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 3.8e-146 522.3 426 61.7
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 3.8e-146 522.3 413 63.9
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 6.5e-146 521.5 445 60.2
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 1.9e-145 520.0 426 61.7
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.5e-142 510.4 372 66.9
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.4e-140 503.8 409 61.6
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 2.4e-140 503.1 467 56.5
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 3.2e-137 492.7 394 62.4
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 9.3e-137 491.1 378 62.2
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 2.7e-136 489.6 378 64.6
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 6.1e-136 488.4 453 56.5
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 7.9e-136 488.0 376 62.5
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 1.3e-135 487.3 426 60.1
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.1e-134 484.2 380 60.5
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 2.5e-134 483.0 435 55.9
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 4.3e-134 482.3 453 55.8
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 6.9e-132 474.9 429 56.9
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.2e-131 474.2 440 56.8
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 4.5e-131 472.2 434 55.1
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 5.0e-130 468.8 374 61.2
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 6.1e-128 461.8 508 50.6
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 2.3e-127 459.9 347 63.7
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 4.3e-126 455.7 373 59.8
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 7.4e-126 454.9 374 60.4
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 6.3e-125 451.8 375 58.1
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 8.2e-125 451.4 367 60.8
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 9.1e-124 448.0 374 59.6
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.2e-123 447.6 416 51.9
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 3.4e-123 446.0 435 53.1
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 2.2e-122 443.4 446 51.8
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 6.5e-122 441.8 501 47.9
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 1.4e-119 434.1 372 57.0
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 6.7e-119 431.8 318 63.8
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 8.8e-119 431.4 446 51.6
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.5e-118 430.6 444 53.2
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 1.3e-117 427.6 436 51.6
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 3.7e-117 426.0 439 53.1
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 6.3e-117 425.2 446 52.2
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 1.5e-115 420.6 442 52.5
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 7.7e-115 418.3 449 51.4
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 1.3e-114 417.5 449 51.2
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 1.9e-113 413.7 446 51.1
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.6e-112 410.6 439 53.3
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 1.7e-109 400.6 400 52.0
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 2.8e-109 399.8 347 63.7
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 2.0e-107 393.7 445 49.4
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 2.6e-107 393.3 294 67.3
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 4.2e-105 386.0 437 48.5
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 2.7e-104 383.3 422 51.9
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 8.8e-103 378.3 451 48.6
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 4.5e-99 365.9 382 52.1
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 1.0e-98 364.8 416 45.7
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 2.2e-98 363.6 412 47.1
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 5.0e-98 362.5 389 50.6
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.6e-96 357.5 480 42.3
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 2.1e-96 357.1 438 47.5
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 3.0e-95 353.2 444 41.9
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.2e-94 351.3 426 44.8
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.7e-93 346.3 456 46.7
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 4.5e-91 339.3 448 45.3
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.5e-89 334.3 451 44.8
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 7.0e-84 315.5 347 49.6
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 9.8e-78 295.0 267 55.4
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.3e-74 284.6 387 40.6
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.7e-74 284.3 417 38.4
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 2.5e-57 227.3 438 33.3
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 2.4e-55 220.7 288 46.9
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 1.9e-28 131.3 130 48.5
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 3.5e-27 127.1 147 49.0
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 2.5e-17 94.4 59 83.1
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.8e-16 90.9 116 46.6
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 1.9e-12 78.2 52 80.8
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 9.4e-12 75.9 69 66.7
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 1.4e-10 72.0 68 58.8
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 3.0e-10 70.9 56 71.4
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 4.3e-09 67.0 52 75.0
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 5.3e-07 60.1 39 76.9


User provided reference genes

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