Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 1.6e-132 478.0 915 100.0
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 1.7e-81 308.5 926 82.9
RcHm_v2.0_Chr2g0156641 Rosa chinensis HOM05D003210 ORTHO05D000001 8.4e-65 253.1 187 65.8
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.1e-64 250.0 187 64.2
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 3.5e-63 247.7 187 63.6
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 2.6e-58 231.5 200 59.5
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 4.5e-58 230.7 198 60.1
Manes.12G061200 Manihot esculenta HOM05D003210 ORTHO05D000001 9.9e-58 229.6 193 60.1
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 8.4e-57 226.5 208 58.7
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 6.0e-55 220.3 176 60.2
GSVIVG01030055001 Vitis vinifera HOM05D003210 ORTHO05D000001 1.0e-54 219.5 187 58.3
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 1.5e-53 215.7 178 59.0
TWI18G1117 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 5.6e-53 213.8 183 58.5
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 9.6e-53 213.0 190 57.4
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 9.6e-53 213.0 190 57.4
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 9.6e-53 213.0 182 58.8
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 1.3e-52 212.6 187 58.8
Hma1.2p1_0133F.1_g061410 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 1.3e-52 212.6 202 53.5
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 2.1e-52 211.8 201 56.2
Hma1.2p1_1825F.1_g304380 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 3.7e-52 211.1 202 53.0
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 3.7e-52 211.1 176 60.8
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.1e-51 209.5 191 56.0
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 3.1e-51 208.0 200 52.5
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 2.2e-49 201.8 150 62.7
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 2.9e-49 201.4 188 55.9
vmacro12101 Vaccinium macrocarpon HOM05D003210 ORTHO05D000001 2.9e-49 201.4 201 51.7
Solyc07g047820.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 4.2e-48 197.6 175 55.4
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 7.1e-48 196.8 198 51.5
Sopen07g024250 Solanum pennellii HOM05D003210 ORTHO05D000001 9.3e-48 196.4 174 55.2
CAN.G1397.6 Capsicum annuum HOM05D003210 ORTHO05D000001 1.6e-47 195.7 173 55.5
Eucgr.K00651 Eucalyptus grandis HOM05D003210 ORTHO05D000001 4.6e-47 194.1 185 53.5
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 7.9e-47 193.4 135 68.1
Oeu040467.2 Olea europaea HOM05D003210 ORTHO05D000001 6.7e-46 190.3 148 59.5
SalBow7G0399 Salvia bowleyana HOM05D003210 ORTHO05D000001 1.1e-45 189.5 172 54.1
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 2.5e-45 188.3 134 67.2
Nitab4.5_0011940g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.5e-45 188.3 189 51.9
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 2.5e-45 188.3 180 53.3
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 4.3e-45 187.6 155 56.8
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 4.3e-45 187.6 184 51.6
MBI19_g25583_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 1.5e-42 179.1 191 48.2
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 1.5e-42 179.1 183 51.4
QL04p021900 Quercus lobata HOM05D003210 ORTHO05D000001 7.6e-42 176.8 228 75.0
FAN05G1838 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.5e-41 173.7 118 67.8
unitig_748.g8367 Utricularia gibba HOM05D003210 ORTHO05D000001 1.1e-40 172.9 157 53.5
FAN02G2842 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.9e-40 172.2 118 67.8
HanXRQChr03g0075201 Helianthus annuus HOM05D003210 ORTHO05D000001 5.5e-40 170.6 180 44.4
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 5.5e-40 170.6 192 49.0
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.6e-39 169.1 118 66.9
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 3.5e-39 167.9 192 50.0
AUR62015034 Chenopodium quinoa HOM05D003210 ORTHO05D000001 2.3e-38 165.2 189 47.1
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 2.3e-38 165.2 189 47.1
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 2.5e-37 161.8 220 71.8
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 9.0e-35 153.3 162 48.1
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 5.9e-34 150.6 190 44.2
Nitab4.5_0000441g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.0e-30 139.8 209 74.2
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 1.4e-30 139.4 192 43.8
PGSC0003DMG400006128 Solanum tuberosum HOM05D003210 ORTHO05D000001 8.8e-30 136.7 209 73.2
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 8.8e-30 136.7 144 47.9
Migut.M00034 Erythranthe guttata HOM05D003210 ORTHO05D000001 6.9e-27 127.1 198 68.7
COL.COLO4_08492 Corchorus olitorius HOM05D003210 ORTHO05D000001 4.5e-26 124.4 91 67.0
Cc04_g11530 Coffea canephora HOM05D003210 ORTHO05D000001 1.7e-25 122.5 208 66.8
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.5e-24 118.6 155 38.7
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 9.4e-24 116.7 178 36.5
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 3.6e-23 114.8 186 33.9
Hma1.2p1_0133F.1_g061420 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 4.7e-23 114.4 84 64.3
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 1.8e-22 112.5 155 38.7
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 3.0e-22 111.7 176 33.0
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 5.1e-22 110.9 170 34.7
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 1.1e-21 109.8 218 59.6
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 1.1e-21 109.8 218 59.6
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 1.5e-21 109.4 191 34.0
Ah.15g091280 Amaranthus hybridus HOM05D003210 ORTHO05D000001 2.0e-21 109.0 111 48.6
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 2.0e-21 109.0 175 34.9
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 9.7e-21 106.7 187 34.2
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 1.3e-20 106.3 177 33.3
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 1.3e-20 106.3 170 34.7
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 2.2e-20 105.5 170 34.1
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 4.8e-20 104.4 187 33.2
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 6.3e-20 104.0 170 32.9
Dinv33235 Davidia involucrata HOM05D003210 ORTHO05D000001 8.2e-20 103.6 217 62.7
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 8.2e-20 103.6 162 36.4
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 1.1e-19 103.2 161 35.4
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 1.1e-19 103.2 175 33.7
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 1.1e-19 103.2 68 64.7
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 1.1e-19 103.2 159 31.4
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 1.1e-19 103.2 166 33.7
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 1.4e-19 102.8 170 32.9
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.4e-19 102.8 170 34.1
SEGI_31076 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 1.4e-19 102.8 160 37.5
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.8e-19 102.4 187 32.1
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 2.4e-19 102.1 157 36.3
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 5.3e-19 100.9 180 32.2
ATR0665G178 Amborella trichopoda HOM05D003210 ORTHO05D000001 7.0e-19 100.5 180 30.6
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 1.5e-18 99.4 182 33.0
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 2.0e-18 99.0 187 32.6
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 2.0e-18 99.0 188 31.9
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 4.5e-18 97.8 163 34.4
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 7.7e-18 97.1 153 32.7
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 1.0e-17 96.7 157 34.4
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 1.3e-17 96.3 157 33.8
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 2.2e-17 95.5 162 32.1
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 2.9e-17 95.1 166 31.3
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 2.9e-17 95.1 158 29.7
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 3.8e-17 94.7 202 30.2
CDE02G4398 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 5.0e-17 94.4 155 31.0
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 5.0e-17 94.4 170 32.4
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 8.5e-17 93.6 159 32.7
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 1.1e-16 93.2 161 32.9
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 1.1e-16 93.2 160 33.1
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 1.5e-16 92.8 194 32.5
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.5e-16 92.8 184 31.0
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 3.2e-16 91.7 187 33.2
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 3.2e-16 91.7 160 30.0
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 9.4e-16 90.1 193 28.0
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 1.2e-15 89.7 160 33.8
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 1.2e-15 89.7 170 30.0
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 2.7e-15 88.6 189 29.1
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 2.7e-15 88.6 165 30.9
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 4.7e-15 87.8 175 30.3
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 4.7e-15 87.8 170 31.2
Lsat_1_v5_gn_9_104601 Lactuca sativa HOM05D003210 ORTHO05D000001 6.1e-15 87.4 75 54.7
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 3.9e-14 84.7 187 27.8
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 5.2e-14 84.3 170 30.0
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 5.2e-14 84.3 170 30.0
ATR0661G545 Amborella trichopoda HOM05D008810 ORTHO05D010971 8.8e-14 83.6 151 27.8
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 8.8e-14 83.6 153 28.8
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 8.8e-14 83.6 185 27.0
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 1.1e-13 83.2 189 31.2
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.5e-13 82.8 189 27.5
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 1.5e-13 82.8 158 33.5
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 1.5e-13 82.8 177 28.8
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 2.0e-13 82.4 172 29.7
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 2.0e-13 82.4 151 33.1
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.6e-13 82.0 172 29.7
Lj1P792T34 Lonicera japonica HOM05D003210 ORTHO05D000001 2.6e-13 82.0 104 42.3
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 2.6e-13 82.0 189 30.2
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 3.3e-13 81.6 159 25.8
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 3.3e-13 81.6 159 30.2
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 3.3e-13 81.6 175 31.4
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 3.3e-13 81.6 152 32.9
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 4.4e-13 81.3 189 24.9
HanXRQChr13g0389381 Helianthus annuus HOM05D003210 ORTHO05D000001 5.7e-13 80.9 222 55.0
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 5.7e-13 80.9 153 31.4
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 9.7e-13 80.1 163 31.3
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 1.7e-12 79.3 158 29.1
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 1.7e-12 79.3 158 29.1
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 1.7e-12 79.3 158 29.1
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 1.7e-12 79.3 176 27.3
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 2.8e-12 78.6 156 26.3
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 4.8e-12 77.8 152 32.9
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.8e-12 77.8 172 29.1
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 6.3e-12 77.4 160 29.4
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 8.2e-12 77.0 155 29.0
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.1e-11 76.6 152 32.2
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 1.1e-11 76.6 172 29.1
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 1.8e-11 75.9 155 29.0
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.8e-11 75.9 158 32.9
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 1.8e-11 75.9 150 28.0
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 2.4e-11 75.5 150 28.0
Aqoxy4G02220 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 3.1e-11 75.1 78 50.0
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.1e-11 75.1 151 27.8
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 5.3e-11 74.3 155 28.4
GSVIVG01005921001 Vitis vinifera HOM05D008810 ORTHO05D010971 2.6e-10 72.0 145 30.3
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.5e-10 71.6 172 28.5
MBI11_g07406_MAGBIO Magnolia biondii HOM05D008810 ORTHO05D010971 3.5e-10 71.6 166 30.1
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 3.5e-10 71.6 151 27.8
PGSC0003DMG400012917 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.5e-10 71.6 147 28.6
arahy.Tifrunner.gnm1.ann1.PFI7NN Arachis hypogaea HOM05D003210 ORTHO05D000001 7.7e-10 70.5 176 27.8
arahy.Tifrunner.gnm1.ann1.SQ2KUV Arachis hypogaea HOM05D003210 ORTHO05D000001 7.7e-10 70.5 176 27.8
Ah.03g139830 Amaranthus hybridus HOM05D003210 ORTHO05D000001 1.7e-09 69.3 127 30.7
ECA240G1833 Erigeron canadensis HOM05D003210 ORTHO05D000001 2.2e-09 68.9 54 55.6
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 3.8e-09 68.2 193 24.4
Aqoxy2G03931 Aquilegia oxysepala HOM05D008810 ORTHO05D010971 5.0e-09 67.8 178 28.7
BolC1t05560H Brassica oleracea HOM05D008810 ORTHO05D010971 5.0e-09 67.8 175 28.0
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.5e-08 66.2 171 52.6
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 5.5e-08 64.3 171 52.6
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 7.2e-08 63.9 214 24.3
Cpa.g.sc8.119 Carica papaya HOM05D008810 ORTHO05D010971 9.4e-08 63.5 142 28.2
CDE02G0711 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 9.4e-08 63.5 204 60.3
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 9.4e-08 63.5 186 25.3
BNapus_Darmor_BZH_scaffold_109p00140 Brassica napus HOM05D008810 ORTHO05D010971 1.6e-07 62.8 149 27.5
BraA01t04388Z Brassica rapa HOM05D008810 ORTHO05D010971 3.6e-07 61.6 166 25.3
BcaB04g21297 Brassica carinata HOM05D008810 ORTHO05D010971 4.7e-07 61.2 191 25.7
Zm00001eb183350 Zea mays HOM05D003210 ORTHO05D000001 8.0e-07 60.5 52 46.2
THA.LOC109115989 Tarenaya hassleriana HOM05D008470 ORTHO05D010644 6.8e-06 57.4 171 28.1


User provided reference genes

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