Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 7.8e-67 256.9 123 100.0
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 3.5e-59 231.5 123 91.1
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 4.2e-44 181.4 123 78.0
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 7.1e-36 154.1 123 71.5
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.1e-32 142.5 123 67.5
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 6.2e-32 141.0 123 66.7
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 3.2e-28 128.6 124 60.5
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 9.3e-28 127.1 115 64.3
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.1e-27 125.9 123 61.0
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.3e-26 122.5 125 56.0
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 3.9e-26 121.7 123 56.1
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 5.1e-26 121.3 123 56.9
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 5.1e-26 121.3 122 56.6
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.9e-25 119.4 123 54.5
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.3e-25 118.2 123 53.7
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 7.4e-25 117.5 134 56.0
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 7.4e-25 117.5 120 56.7
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.3e-24 116.7 127 53.5
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.6e-24 116.3 123 55.3
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.2e-24 115.9 125 53.6
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.8e-24 115.5 123 52.8
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 3.7e-24 115.2 123 55.3
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.3e-24 114.4 124 54.8
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.3e-24 114.4 124 54.8
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 6.3e-24 114.4 126 54.8
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 8.2e-24 114.0 123 52.8
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.8e-23 112.8 123 52.0
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.8e-23 112.8 123 58.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 3.1e-23 112.1 123 52.0
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 4.1e-23 111.7 127 50.4
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 4.1e-23 111.7 127 50.4
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 5.3e-23 111.3 125 52.8
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.0e-22 109.4 124 52.4
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 2.6e-22 109.0 123 52.8
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.5e-22 108.2 124 54.0
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.5e-22 108.2 124 54.0
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.5e-22 108.2 124 54.0
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.0e-21 107.1 124 51.6
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.2e-21 105.9 124 50.8
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.2e-21 105.9 124 50.8
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 3.8e-21 105.1 123 49.6
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 6.5e-21 104.4 123 48.0
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.9e-20 102.8 123 52.0
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.9e-20 102.8 123 50.4
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 5.5e-20 101.3 123 48.0
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.2e-20 100.9 120 53.3
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 9.3e-20 100.5 120 50.8
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 9.3e-20 100.5 123 47.2
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.2e-19 100.1 124 48.4
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 1.2e-19 100.1 123 47.2
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.6e-19 99.8 123 52.0
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.6e-19 99.8 123 48.8
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 6.1e-19 97.8 123 47.2
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.8e-18 96.3 121 50.4
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.0e-18 95.5 125 46.4
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.9e-18 95.1 126 50.0
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.9e-18 95.1 126 50.0
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 3.9e-18 95.1 125 47.2
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 3.9e-18 95.1 123 46.3
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.1e-18 94.7 124 46.0
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 5.1e-18 94.7 124 46.0
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 5.1e-18 94.7 123 46.3
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 5.1e-18 94.7 123 46.3
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.1e-17 93.6 126 46.0
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.1e-17 93.6 111 49.5
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.9e-17 92.8 125 44.8
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.3e-17 92.0 126 44.4
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.3e-17 92.0 124 48.4
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 3.3e-17 92.0 118 44.9
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 4.3e-17 91.7 125 43.2
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 4.3e-17 91.7 124 46.8
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 5.7e-17 91.3 126 43.7
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 5.7e-17 91.3 126 47.6
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 9.7e-17 90.5 124 41.9
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.8e-16 88.2 125 44.8
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 6.3e-16 87.8 126 41.3
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 8.2e-16 87.4 126 43.7
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 8.2e-16 87.4 126 43.7
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.1e-15 87.0 123 43.9
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 1.4e-15 86.7 123 42.3
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.8e-15 86.3 123 43.9
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.8e-15 86.3 121 44.6
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.8e-15 86.3 128 39.8
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.4e-15 85.9 126 42.9
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.4e-15 85.9 125 40.0
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 2.4e-15 85.9 107 47.7
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 3.1e-15 85.5 114 45.6
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 3.1e-15 85.5 126 45.2
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 3.1e-15 85.5 106 47.2
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 5.3e-15 84.7 124 42.7
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 5.3e-15 84.7 126 42.1
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 6.9e-15 84.3 98 53.1
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 6.9e-15 84.3 127 42.5
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.2e-14 83.6 129 39.5
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.2e-14 83.6 124 41.9
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.5e-14 83.2 123 41.5
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.5e-14 83.2 123 42.3
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.5e-14 83.2 124 41.9
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 2.0e-14 82.8 126 40.5
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.0e-14 82.8 112 44.6
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 2.6e-14 82.4 130 41.5
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 4.5e-14 81.6 119 39.5
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.5e-14 81.6 125 40.8
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 5.9e-14 81.3 126 37.3
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.0e-13 80.5 121 41.3
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.0e-13 80.5 108 42.6
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.3e-13 80.1 90 55.6
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.3e-13 80.1 113 39.8
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 2.2e-13 79.3 110 51.8
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 2.2e-13 79.3 125 40.8
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.2e-13 79.3 109 42.2
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.9e-13 79.0 123 40.7
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.9e-13 79.0 124 41.1
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.8e-13 78.6 132 37.9
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.0e-13 78.2 118 40.7
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.5e-13 77.4 118 39.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.1e-12 77.0 114 37.7
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.4e-12 76.6 126 34.9
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.2e-12 75.5 123 39.0
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 7.2e-12 74.3 112 42.9
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 2.1e-11 72.8 123 37.4
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.7e-11 72.4 112 38.4
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.7e-11 72.4 123 37.4
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.7e-11 72.4 123 37.4
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 3.6e-11 72.0 123 37.4
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 3.6e-11 72.0 123 37.4
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 7.9e-11 70.9 123 35.8
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 7.9e-11 70.9 123 37.4
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.4e-10 70.1 109 44.0
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.3e-10 69.3 61 54.1
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.9e-10 68.6 123 35.8
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 3.9e-10 68.6 125 36.0
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.1e-09 67.0 114 41.2
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 2.0e-09 66.2 108 38.0
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 7.4e-09 64.3 114 36.0
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 2.2e-08 62.8 133 36.1
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 2.2e-08 62.8 118 35.6
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.2e-08 62.8 123 34.1
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 1.1e-07 60.5 118 31.4
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 5.3e-07 58.2 95 35.8
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.2e-06 57.0 56 48.2
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.0e-06 56.2 103 37.9
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 5.9e-06 54.7 124 33.1


User provided reference genes

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