Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 6.5e-193 677.6 430 100.0
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 1.7e-113 413.7 401 68.6
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 7.1e-83 312.0 391 50.4
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.6e-77 293.5 410 47.1
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.8e-71 273.5 391 46.3
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.2e-67 259.6 391 45.3
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 7.2e-67 258.8 391 45.3
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 7.4e-64 248.8 409 42.8
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 1.1e-62 245.0 394 44.7
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 1.8e-62 244.2 394 44.2
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 1.0e-57 228.4 409 47.2
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 1.0e-52 211.8 393 41.0
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 5.0e-52 209.5 405 39.3
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 2.1e-50 204.1 396 38.9
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 3.0e-49 200.3 400 40.0
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 2.0e-48 197.6 405 35.6
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 4.4e-48 196.4 417 40.8
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 6.3e-47 192.6 397 45.1
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 1.4e-46 191.4 411 34.8
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 2.4e-46 190.7 394 37.3
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 3.1e-46 190.3 306 41.8
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 1.2e-45 188.3 388 36.3
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 7.7e-45 185.7 389 36.8
RcHm_v2.0_Chr2g0160061 Rosa chinensis HOM05D005864 ORTHO05D006770 8.5e-44 182.2 190 56.8
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 1.5e-43 181.4 393 36.6
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 1.5e-43 181.4 392 35.5
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 1.5e-43 181.4 395 36.7
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 1.9e-43 181.0 405 39.8
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 1.9e-43 181.0 391 35.0
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 3.2e-43 180.3 390 41.3
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 3.6e-42 176.8 408 33.6
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 8.0e-42 175.6 407 35.1
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 8.8e-41 172.2 390 36.9
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 8.8e-41 172.2 393 41.5
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 2.0e-40 171.0 424 33.3
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 4.4e-40 169.9 394 36.5
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 5.7e-40 169.5 396 35.4
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 1.3e-39 168.3 405 32.6
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 1.6e-37 161.4 413 41.2
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 2.0e-37 161.0 405 33.8
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 5.9e-37 159.5 417 33.3
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 6.6e-36 156.0 409 38.4
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 1.1e-35 155.2 377 41.1
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 1.9e-35 154.5 398 32.4
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 3.3e-35 153.7 339 42.5
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 6.1e-34 149.4 384 39.6
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 8.0e-34 149.1 391 31.2
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 1.4e-33 148.3 389 38.8
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 3.0e-33 147.1 391 33.5
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 5.2e-33 146.4 335 35.2
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 8.9e-33 145.6 385 37.1
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 1.2e-32 145.2 409 39.1
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 2.2e-31 141.0 471 29.7
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 3.7e-31 140.2 388 32.0
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 4.9e-31 139.8 397 31.5
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 1.1e-30 138.7 395 32.7
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 1.2e-29 135.2 412 33.3
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 2.3e-28 131.0 236 40.3
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 2.9e-28 130.6 412 34.2
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 8.6e-28 129.0 417 31.7
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 1.5e-27 128.3 394 31.0
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 4.3e-27 126.7 397 36.5
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 3.6e-26 123.6 425 28.7
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 3.6e-26 123.6 396 31.1
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 3.6e-26 123.6 396 29.8
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 6.2e-26 122.9 416 28.8
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 1.4e-25 121.7 424 29.2
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 5.2e-25 119.8 424 29.2
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 1.5e-24 118.2 390 30.0
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 9.8e-24 115.5 475 28.8
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 1.7e-23 114.8 409 34.0
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.7e-23 114.8 416 30.5
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 3.7e-23 113.6 405 29.1
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 3.7e-23 113.6 328 32.3
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 3.2e-22 110.5 400 28.8
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 7.0e-22 109.4 334 31.1
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 4.6e-21 106.7 393 29.3
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 7.8e-21 105.9 247 32.8
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 1.7e-20 104.8 390 33.6
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 1.7e-20 104.8 167 40.7
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-19 101.7 450 27.3
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 2.5e-19 100.9 406 26.4
MD04G1053600 Malus domestica HOM05D043473 ORTHO05D006770 9.5e-19 99.0 97 60.8
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 1.6e-18 98.2 392 27.8
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 1.6e-18 98.2 372 29.3
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 3.6e-18 97.1 330 28.8
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 3.6e-18 97.1 392 28.3
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 1.4e-17 95.1 387 28.4
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 1.8e-17 94.7 334 29.0
Rhsim06G0158200 Rhododendron simsii HOM05D005864 ORTHO05D006770 5.2e-17 93.2 336 31.0
vmacro12226 Vaccinium macrocarpon HOM05D005864 ORTHO05D006770 6.8e-17 92.8 359 29.5
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 1.5e-16 91.7 254 35.0
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 1.5e-16 91.7 396 26.8
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 2.0e-16 91.3 167 41.3
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 2.0e-16 91.3 386 25.1
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 1.3e-15 88.6 389 26.7
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 4.9e-15 86.7 385 27.8
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 1.1e-14 85.5 330 27.0
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 1.9e-14 84.7 386 26.9
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 2.4e-14 84.3 391 26.3
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 2.7e-13 80.9 385 27.3
TAR626G0200 Trochodendron aralioides HOM05D005864 ORTHO05D006770 1.7e-12 78.2 163 38.0
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 1.1e-11 75.5 384 26.0
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 3.3e-11 73.9 331 23.6
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 9.5e-11 72.4 395 25.1
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 1.6e-10 71.6 402 33.3
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 4.0e-09 67.0 386 25.9
Ca_27661_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 2.0e-08 64.7 144 35.4
Ca_27662_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 2.0e-08 64.7 144 35.4
Zm00001eb273610 Zea mays HOM05D005864 ORTHO05D006770 4.4e-08 63.5 235 26.0
Hund01249 Selenicereus undatus HOM05D005864 ORTHO05D006770 8.4e-07 59.3 146 33.6
Lsat_1_v5_gn_9_59080 Lactuca sativa HOM05D005864 ORTHO05D006770 1.4e-06 58.5 95 41.1
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 4.1e-06 57.0 392 24.5


User provided reference genes

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