Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 3.9e-157 558.1 296 100.0
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 2.1e-142 509.2 292 92.8
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 2.3e-133 479.2 287 87.1
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.9e-128 462.2 291 82.8
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 1.5e-127 459.9 291 82.5
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 5.6e-127 458.0 292 79.8
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.7e-126 454.9 292 81.8
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.4e-125 453.4 292 81.8
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.4e-125 453.4 292 81.8
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 8.9e-125 450.7 291 81.4
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 3.4e-124 448.7 295 77.6
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 8.3e-123 444.1 295 77.3
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 8.3e-123 444.1 295 77.3
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 3.2e-122 442.2 295 76.6
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 4.6e-121 438.3 292 78.1
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 5.9e-121 438.0 298 78.2
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.7e-120 436.4 292 77.7
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.3e-120 436.0 293 79.5
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 2.3e-120 436.0 293 79.5
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 3.0e-120 435.6 291 78.0
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 4.3e-119 431.8 294 78.6
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 4.3e-119 431.8 296 78.7
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.6e-118 429.9 292 76.4
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 3.6e-118 428.7 292 77.4
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 3.6e-118 428.7 293 76.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 4.7e-118 428.3 294 76.5
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 6.2e-118 427.9 293 78.2
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.4e-117 426.8 292 75.3
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.8e-117 426.4 293 78.2
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 4.0e-117 425.2 295 74.6
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 5.2e-117 424.9 293 77.8
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 6.8e-117 424.5 292 75.3
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 8.9e-117 424.1 357 66.4
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 8.9e-117 424.1 293 77.8
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 1.2e-116 423.7 295 75.3
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.5e-116 423.3 294 75.5
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.0e-116 422.9 292 74.3
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 3.4e-116 422.2 291 74.9
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 3.4e-116 422.2 285 76.1
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 5.8e-116 421.4 302 73.8
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 1.3e-115 420.2 291 74.9
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 1.7e-115 419.9 288 77.4
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 8.3e-115 417.5 292 74.0
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.4e-114 416.8 293 74.1
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 2.4e-114 416.0 302 75.5
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 3.2e-114 415.6 292 74.7
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 7.0e-114 414.5 293 76.1
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 9.2e-114 414.1 291 74.9
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 9.2e-114 414.1 293 74.7
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 2.0e-113 412.9 291 74.6
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 2.0e-113 412.9 292 72.9
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 3.5e-113 412.1 293 72.4
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 6.0e-113 411.4 293 75.1
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 3.0e-112 409.1 291 73.9
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 9.5e-111 404.1 293 73.4
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 1.6e-110 403.3 288 74.0
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.4e-109 400.2 274 75.5
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.4e-109 400.2 274 75.5
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.3e-109 399.4 293 72.7
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.0e-109 398.7 293 71.3
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 5.2e-109 398.3 293 72.4
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 8.9e-109 397.5 291 73.5
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 8.9e-109 397.5 289 72.3
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.2e-108 397.1 341 65.4
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 1.5e-108 396.7 273 73.6
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.0e-108 396.4 341 65.4
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.6e-108 396.0 292 71.9
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 3.4e-108 395.6 291 72.5
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 4.4e-108 395.2 288 74.3
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.8e-108 394.8 291 72.2
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 5.8e-108 394.8 293 72.4
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 5.8e-108 394.8 291 72.5
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 7.5e-108 394.4 290 70.3
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 9.8e-108 394.0 294 70.7
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.3e-107 393.7 291 71.8
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 1.3e-107 393.7 289 72.0
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.3e-107 393.7 293 70.3
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.9e-107 392.5 293 73.7
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 2.9e-107 392.5 293 69.6
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 4.9e-107 391.7 292 71.6
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 4.9e-107 391.7 293 71.3
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 4.9e-107 391.7 293 71.3
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 6.4e-107 391.3 291 70.8
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 6.4e-107 391.3 288 71.9
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 8.3e-107 391.0 293 71.3
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 8.3e-107 391.0 293 71.3
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.1e-106 390.6 286 75.2
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 1.4e-106 390.2 294 70.7
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 2.4e-106 389.4 289 72.7
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 3.2e-106 389.0 293 71.3
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 4.1e-106 388.7 293 71.0
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 5.4e-106 388.3 289 71.3
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 5.4e-106 388.3 292 71.2
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 5.4e-106 388.3 293 70.6
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 9.2e-106 387.5 290 71.4
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 9.2e-106 387.5 284 71.1
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 1.6e-105 386.7 286 70.6
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.1e-105 386.3 299 69.6
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 2.1e-105 386.3 310 67.7
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 3.5e-105 385.6 236 81.8
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 7.8e-105 384.4 292 70.9
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.3e-104 383.6 292 69.2
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 1.3e-104 383.6 274 72.6
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 2.3e-104 382.9 330 66.1
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.3e-104 382.9 289 72.3
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 2.5e-103 379.4 318 67.3
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 5.6e-103 378.3 293 66.2
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 7.3e-103 377.9 290 69.3
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 3.6e-102 375.6 296 69.6
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 3.1e-101 372.5 292 70.2
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-100 370.5 292 70.2
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 5.8e-100 368.2 291 67.4
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 5.4e-98 361.7 269 72.9
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.6e-97 360.1 292 68.2
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 4.6e-97 358.6 229 78.6
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 6.0e-97 358.2 293 66.6
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 2.3e-96 356.3 294 66.0
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 5.1e-96 355.1 350 59.1
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 8.6e-96 354.4 288 66.3
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 2.5e-95 352.8 292 64.7
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.1e-94 349.7 291 63.2
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 5.2e-93 345.1 294 66.0
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 3.4e-92 342.4 326 61.0
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 9.9e-92 340.9 221 76.9
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 4.9e-91 338.6 292 64.4
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.9e-90 336.7 266 66.9
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.3e-88 329.7 222 74.3
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 3.0e-88 329.3 197 85.8
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 4.8e-86 322.0 229 69.9
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.4e-82 310.5 227 72.7
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.4e-82 310.5 231 72.3
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.7e-81 306.2 229 70.7
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.3e-80 303.1 217 72.4
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.9e-80 302.4 243 63.4
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 2.5e-79 299.7 213 70.0
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 2.1e-78 296.6 201 72.6
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 6.2e-78 295.0 295 56.9
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 5.8e-76 288.5 265 61.5
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 7.6e-76 288.1 264 62.5
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 1.9e-74 283.5 188 77.1
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.8e-69 266.9 185 75.1
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 2.4e-69 266.5 197 71.6
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.3e-59 234.2 229 52.8
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 6.5e-59 231.9 234 52.6
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.1e-53 214.5 180 62.2
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.6e-49 200.7 240 47.1
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 2.7e-49 199.9 150 67.3
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 8.5e-43 178.3 161 60.2
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 6.7e-40 168.7 224 42.4
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.6e-25 120.9 156 49.4
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 7.0e-21 105.5 67 77.6
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 7.7e-20 102.1 67 77.6
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 6.5e-19 99.0 59 84.7
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.1e-13 81.6 114 46.5
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 2.7e-12 77.0 42 81.0
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.4e-08 64.7 47 70.2


User provided reference genes

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