Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 3.2e-178 628.2 310 100.0
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.9e-158 562.0 337 83.1
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 4.9e-150 534.6 338 79.3
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 2.5e-146 522.3 339 79.6
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 2.0e-143 512.7 337 76.3
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 3.8e-142 508.4 331 76.4
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 1.1e-141 506.9 337 75.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.6e-140 503.1 337 75.4
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.2e-137 493.4 337 73.6
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 1.1e-136 490.3 337 72.1
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 2.4e-136 489.2 335 72.8
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.2e-135 486.9 335 72.2
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 2.2e-134 482.6 336 71.1
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 1.4e-133 479.9 335 70.7
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 6.0e-132 474.6 337 70.0
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 6.0e-132 474.6 335 69.6
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 2.3e-131 472.6 334 70.1
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 3.9e-131 471.9 337 68.5
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 5.1e-131 471.5 336 67.9
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 8.7e-131 470.7 335 69.0
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 8.7e-131 470.7 336 69.9
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.5e-130 469.9 337 70.3
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.5e-130 469.9 337 70.0
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 4.8e-129 464.9 336 68.5
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.2e-129 464.5 336 68.5
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.2e-129 464.5 336 68.5
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.4e-128 463.4 327 69.1
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.4e-128 462.6 335 68.4
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.4e-128 462.6 336 68.2
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 2.4e-128 462.6 337 67.4
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.4e-128 462.6 330 69.1
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 5.3e-128 461.5 335 68.1
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 9.0e-128 460.7 335 68.7
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.5e-127 459.9 333 67.6
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.5e-127 458.4 337 68.8
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 7.6e-127 457.6 335 67.2
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 1.7e-126 456.4 336 67.9
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 2.2e-126 456.1 336 66.7
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.2e-126 456.1 337 66.2
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 6.4e-126 454.5 337 67.1
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 6.4e-126 454.5 337 66.8
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.9e-125 453.0 328 67.4
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 1.9e-125 453.0 334 66.8
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.2e-125 452.2 337 67.1
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 4.2e-125 451.8 336 67.3
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 7.1e-125 451.1 329 67.5
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 7.1e-125 451.1 336 67.0
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.6e-124 449.9 337 65.0
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 2.1e-124 449.5 337 66.8
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 2.7e-124 449.1 327 67.6
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 3.5e-124 448.7 336 66.4
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 6.0e-124 448.0 332 66.9
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.3e-123 446.8 337 65.9
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.8e-123 446.4 337 66.5
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 5.1e-123 444.9 334 65.9
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-122 443.7 337 66.5
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.9e-122 443.0 336 63.7
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 2.5e-122 442.6 338 66.3
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 4.3e-122 441.8 328 67.1
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 4.3e-122 441.8 337 64.4
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 4.3e-122 441.8 327 67.0
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 7.4e-122 441.0 338 66.0
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 9.6e-122 440.7 346 65.0
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 9.6e-122 440.7 337 64.7
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 2.1e-121 439.5 336 64.0
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 4.8e-121 438.3 337 66.2
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 4.8e-121 438.3 337 66.2
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 8.1e-121 437.6 335 64.8
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 8.1e-121 437.6 334 64.7
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.1e-120 437.2 337 63.5
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 5.3e-120 434.9 328 64.0
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 6.9e-120 434.5 329 64.4
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 2.0e-119 433.0 335 64.2
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 5.8e-119 431.4 326 63.5
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 5.8e-119 431.4 334 64.1
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 3.8e-118 428.7 337 62.6
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 4.9e-118 428.3 335 62.1
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 1.4e-117 426.8 341 63.0
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 4.2e-117 425.2 333 63.4
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 6.0e-116 421.4 337 61.4
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 7.9e-116 421.0 335 62.4
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.0e-115 420.6 333 63.1
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 3.0e-115 419.1 334 63.5
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 5.1e-115 418.3 339 61.7
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.5e-114 416.8 337 62.0
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 2.5e-114 416.0 337 60.8
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 3.3e-114 415.6 330 61.8
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.3e-114 415.2 337 61.1
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 2.1e-113 412.9 327 62.1
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.8e-113 412.5 332 63.9
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 4.8e-113 411.8 337 60.2
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 8.2e-113 411.0 345 61.4
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.1e-112 410.6 335 62.4
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.1e-112 410.6 289 72.3
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.4e-112 410.2 311 65.0
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.4e-112 410.2 329 63.8
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 1.0e-110 404.1 336 58.9
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.2e-110 402.9 309 66.3
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 3.8e-110 402.1 333 62.2
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 5.5e-109 398.3 331 61.0
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 2.1e-108 396.4 335 59.1
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.1e-108 396.4 334 62.3
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 5.1e-107 391.7 335 57.9
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 8.2e-105 384.4 326 59.2
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.1e-104 384.0 326 58.9
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 9.0e-104 380.9 329 57.4
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 2.6e-103 379.4 334 57.2
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.3e-102 377.1 327 57.8
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.7e-102 376.7 325 58.8
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 6.5e-102 374.8 329 57.1
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 3.6e-100 369.0 329 56.8
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.0e-99 367.5 330 56.7
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 1.3e-99 367.1 314 57.3
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 5.7e-98 361.7 320 59.1
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.4e-96 357.1 289 62.3
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 4.1e-96 355.5 312 59.9
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 2.0e-90 336.7 377 47.2
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 6.5e-86 321.6 280 58.6
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.7e-84 316.2 261 62.5
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.4e-75 287.3 197 73.6
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.8e-75 287.0 341 47.5
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 9.7e-74 281.2 377 44.3
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 4.5e-71 272.3 272 51.5
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 1.0e-70 271.2 217 65.4
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 2.9e-70 269.6 341 46.3
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 4.7e-68 262.3 350 44.6
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.1e-64 251.1 312 46.8
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 2.4e-64 250.0 342 44.7
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.7e-63 246.5 187 63.1
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 7.2e-61 238.4 228 58.3
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.6e-60 237.3 403 36.7
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 4.7e-60 235.7 399 39.1
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 2.9e-54 216.5 155 65.2
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 2.7e-47 193.4 303 41.6
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 4.6e-47 192.6 185 51.4
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 4.7e-44 182.6 148 58.8
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.2e-42 177.9 378 34.7
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 4.4e-42 176.0 142 58.5
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 5.8e-42 175.6 183 52.5
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 2.4e-40 170.2 132 61.4
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 2.4e-40 170.2 132 61.4
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 8.3e-33 145.2 248 35.9
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 6.0e-31 139.0 108 63.0
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 6.0e-31 139.0 89 74.2
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 2.5e-29 133.7 109 65.1
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 3.3e-29 133.3 90 66.7
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 1.3e-22 111.3 128 46.9
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.4e-16 91.3 76 55.3
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.2e-15 88.2 66 63.6
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 2.5e-13 80.5 66 60.6
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 3.3e-13 80.1 287 25.4
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.6e-10 70.5 39 84.6
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 4.2e-08 63.2 58 55.2
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.8e-06 57.8 87 37.9
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 6.7e-06 55.8 51 56.9


User provided reference genes

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