Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 0.0e+00 1135.9 600 100.0
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 7.9e-290 1000.0 601 89.4
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 1.7e-236 822.8 613 70.8
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 2.6e-200 702.6 604 64.4
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.0e-188 664.1 635 59.5
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 5.0e-183 645.2 603 60.5
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 9.7e-179 630.9 603 60.0
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.1e-173 613.2 584 60.3
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 1.8e-169 600.1 478 66.7
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 1.3e-167 594.0 552 61.1
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 9.1e-161 571.2 562 58.4
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 1.0e-159 567.8 625 53.9
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.4e-153 547.4 487 62.6
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 1.5e-150 537.3 616 51.5
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 4.2e-150 535.8 504 59.5
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.4e-148 530.8 556 55.0
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 5.2e-148 528.9 530 57.5
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 5.2e-148 528.9 468 60.0
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 6.8e-148 528.5 639 50.9
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 2.6e-147 526.6 512 58.4
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 8.3e-146 521.5 498 57.4
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.1e-145 521.2 499 59.7
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 5.4e-145 518.8 547 55.2
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 9.2e-145 518.1 547 55.0
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 1.6e-144 517.3 542 54.6
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 2.7e-144 516.5 470 59.6
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 3.9e-143 512.7 539 56.6
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 5.0e-143 512.3 496 57.7
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.9e-142 510.4 547 55.6
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 4.3e-142 509.2 472 58.9
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 2.8e-141 506.5 500 56.2
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 1.8e-140 503.8 559 54.6
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 1.2e-139 501.1 486 56.4
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 2.2e-138 496.9 451 61.9
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 4.1e-137 492.7 443 58.7
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 1.2e-136 491.1 451 60.5
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 2.7e-136 490.0 620 49.4
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 3.5e-136 489.6 470 58.3
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 4.6e-136 489.2 455 60.4
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 1.3e-135 487.6 505 56.8
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 3.0e-135 486.5 459 59.9
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 3.9e-135 486.1 506 54.9
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 8.6e-135 485.0 623 48.2
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 1.5e-134 484.2 497 54.7
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 5.6e-134 482.3 615 47.6
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 2.1e-133 480.3 501 54.1
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 1.1e-132 478.0 475 58.3
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 1.2e-131 474.6 426 61.0
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 2.0e-131 473.8 504 54.0
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 3.4e-131 473.0 470 56.4
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 4.4e-131 472.6 427 59.3
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 4.4e-131 472.6 516 52.5
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 4.9e-130 469.2 543 53.4
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 4.1e-129 466.1 455 57.1
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 5.4e-129 465.7 534 53.4
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 2.1e-128 463.8 543 53.0
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 2.1e-128 463.8 543 53.0
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 2.1e-128 463.8 449 58.1
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 3.5e-128 463.0 430 57.4
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 4.6e-128 462.6 459 57.7
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.2e-125 454.5 442 58.4
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 1.2e-125 454.5 523 52.0
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 1.6e-125 454.1 515 53.0
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 1.1e-124 451.4 553 53.0
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 1.4e-124 451.1 534 53.9
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 3.1e-124 449.9 516 52.5
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 3.4e-123 446.4 533 50.7
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 5.6e-118 429.1 533 48.8
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 4.7e-117 426.0 458 56.8
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 1.1e-116 424.9 419 57.3
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 5.8e-115 419.1 457 54.5
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 4.9e-114 416.0 399 57.4
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 8.4e-114 415.2 525 48.0
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 3.2e-113 413.3 529 49.9
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 4.6e-112 409.5 490 51.0
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.9e-110 404.1 459 51.4
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 3.3e-110 403.3 488 51.0
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 6.2e-109 399.1 516 49.4
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 8.1e-109 398.7 421 55.1
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.4e-108 397.9 454 50.9
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 3.4e-107 393.3 525 45.3
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 9.9e-107 391.7 375 58.4
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.3e-106 391.3 400 57.5
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.4e-105 387.9 458 52.2
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 1.4e-105 387.9 485 48.5
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 5.4e-105 386.0 396 56.6
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 1.2e-104 384.8 487 48.7
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 1.2e-104 384.8 487 48.9
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 1.6e-104 384.4 405 55.3
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 1.6e-104 384.4 405 55.3
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.6e-104 384.4 468 49.6
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 3.5e-104 383.3 487 50.7
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 4.6e-104 382.9 497 50.5
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 7.8e-104 382.1 391 56.3
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 1.3e-103 381.3 487 48.7
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 1.3e-103 381.3 482 48.3
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 2.5e-102 377.1 465 49.0
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 2.1e-101 374.0 486 47.7
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.4e-100 371.3 508 48.0
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 1.8e-100 370.9 460 50.9
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 1.2e-96 358.2 452 47.6
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 1.2e-96 358.2 388 52.3
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 1.6e-96 357.8 395 52.7
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.6e-96 357.8 488 45.7
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 2.1e-96 357.5 503 46.3
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 6.0e-96 355.9 475 48.6
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 3.7e-93 346.7 529 43.1
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 3.4e-91 340.1 404 50.2
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 1.0e-90 338.6 447 49.0
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 3.8e-90 336.7 362 53.6
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 4.9e-90 336.3 373 53.1
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 7.1e-89 332.4 418 49.0
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 7.1e-89 332.4 410 49.5
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 1.2e-88 331.6 420 48.8
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 4.6e-88 329.7 373 51.2
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 4.6e-88 329.7 412 48.8
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 3.0e-87 327.0 414 48.1
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 3.0e-87 327.0 415 48.0
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 3.0e-87 327.0 414 48.1
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 8.2e-85 318.9 494 41.7
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 1.1e-84 318.5 433 43.4
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 1.2e-83 315.1 389 49.9
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.6e-83 313.9 499 41.5
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 2.9e-82 310.5 299 53.5
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 6.7e-79 299.3 280 58.2
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 1.5e-78 298.1 409 46.9
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.3e-77 295.0 280 58.9
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.2e-77 294.3 432 43.5
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 3.8e-74 283.5 311 52.7
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 3.2e-73 280.4 226 63.3
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.3e-69 268.5 281 55.5
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 3.4e-67 260.4 346 42.8
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 3.7e-61 240.4 290 47.9
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 6.3e-61 239.6 218 61.0
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 1.7e-58 231.5 392 37.5
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.1e-57 228.8 238 55.5
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 3.7e-53 213.8 232 51.7
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.2e-48 198.7 290 43.8
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 2.6e-46 191.0 248 51.6
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 5.0e-42 176.8 426 33.1
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 3.2e-41 174.1 450 33.8
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 1.8e-39 168.3 355 32.7
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 2.2e-37 161.4 166 54.8
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 2.8e-37 161.0 178 49.4
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 2.0e-27 128.3 202 37.1
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 1.9e-25 121.7 389 31.9
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 2.5e-25 121.3 204 36.3
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 7.8e-19 99.8 122 49.2
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.5e-14 85.5 120 45.8
Lsat_1_v5_gn_8_136421 Lactuca sativa HOM05D002617 ORTHO05D048373 7.3e-09 66.6 54 59.3
SEGI_27964 Sequoiadendron giganteum HOM05D002617 ORTHO05D006076 3.1e-07 61.2 76 46.1
Actinidia19277 Actinidia chinensis HOM05D002617 ORTHO05D006076 8.9e-07 59.7 43 69.8
CDE03G0290 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.5e-06 58.9 132 31.8


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