Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 7.4e-27 123.2 68 100.0
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 2.8e-18 94.7 68 79.4
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 2.8e-18 94.7 68 79.4
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 4.8e-18 94.0 68 79.4
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 8.3e-18 93.2 68 77.9
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 1.1e-17 92.8 68 77.9
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 2.4e-17 91.7 68 76.5
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 7.0e-17 90.1 66 75.8
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 2.0e-16 88.6 67 73.1
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 6.5e-15 83.6 66 71.2
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 1.1e-14 82.8 68 67.6
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 5.5e-14 80.5 66 68.2
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 5.5e-14 80.5 68 66.2
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 7.2e-14 80.1 62 72.6
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 4.7e-13 77.4 64 68.8
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 6.1e-13 77.0 65 66.2
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.8e-12 75.5 68 64.7
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 2.3e-12 75.1 68 64.7
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 2.3e-12 75.1 68 66.2
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 6.8e-12 73.6 68 63.2
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 6.8e-12 73.6 66 65.2
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.5e-11 72.4 63 71.4
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 1.5e-11 72.4 66 63.6
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.0e-11 72.0 68 60.3
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 2.0e-11 72.0 68 61.8
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 2.6e-11 71.6 66 63.6
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 3.4e-11 71.2 68 61.8
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 4.4e-11 70.9 65 61.5
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 4.4e-11 70.9 65 61.5
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.4e-11 70.9 68 61.8
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 4.4e-11 70.9 68 61.8
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 4.4e-11 70.9 68 61.8
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 5.7e-11 70.5 66 60.6
FAN09G3043 Fragaria x ananassa HOM05D002873 ORTHO05D002978 9.8e-11 69.7 66 63.6
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 9.8e-11 69.7 62 62.9
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 1.3e-10 69.3 68 54.4
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 1.3e-10 69.3 68 54.4
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 1.3e-10 69.3 68 63.2
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 1.7e-10 68.9 69 59.4
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.7e-10 68.9 68 58.8
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 2.2e-10 68.6 67 61.2
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 2.2e-10 68.6 67 61.2
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 2.2e-10 68.6 67 61.2
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 2.8e-10 68.2 66 62.1
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 3.7e-10 67.8 68 52.9
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 3.7e-10 67.8 68 52.9
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 3.7e-10 67.8 68 52.9
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 3.7e-10 67.8 68 58.8
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 3.7e-10 67.8 68 58.8
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 4.8e-10 67.4 67 61.2
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 4.8e-10 67.4 67 61.2
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.1e-09 66.2 66 59.1
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.1e-09 66.2 66 60.6
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 1.1e-09 66.2 66 60.6
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 58.8
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 1.4e-09 65.9 68 55.9
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 60.6
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 1.4e-09 65.9 64 59.4
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 1.8e-09 65.5 63 60.3
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 1.8e-09 65.5 68 57.4
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 2.4e-09 65.1 66 59.1
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 2.4e-09 65.1 67 55.2
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 3.1e-09 64.7 65 56.9
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 4.1e-09 64.3 66 59.1
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 4.1e-09 64.3 62 61.3
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 5.4e-09 63.9 65 56.9
Potri.017G108500 Populus trichocarpa HOM05D002873 ORTHO05D002978 7.0e-09 63.5 92 45.7
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 7.0e-09 63.5 68 57.4
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 9.1e-09 63.2 61 60.7
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 9.1e-09 63.2 67 58.2
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 9.1e-09 63.2 68 55.9
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.2e-08 62.8 65 56.9
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 1.6e-08 62.4 47 72.3
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 1.6e-08 62.4 68 57.4
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 54.5
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 2.0e-08 62.0 61 60.7
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 2.0e-08 62.0 63 54.0
RcHm_v2.0_Chr2g0163981 Rosa chinensis HOM05D002873 ORTHO05D002978 2.0e-08 62.0 105 43.8
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 2.7e-08 61.6 62 56.5
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 2.7e-08 61.6 62 56.5
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 2.7e-08 61.6 62 56.5
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 2.7e-08 61.6 62 56.5
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.7e-08 61.6 62 53.2
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 4.5e-08 60.8 66 53.0
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 4.5e-08 60.8 70 54.3
FvH4_6g45800 Fragaria vesca HOM05D002873 ORTHO05D002978 5.9e-08 60.5 110 41.8
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 5.9e-08 60.5 68 55.9
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 7.7e-08 60.1 62 54.8
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 7.7e-08 60.1 62 54.8
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 7.7e-08 60.1 62 54.8
MELO3C005501.2 Cucumis melo HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 55.9
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 56.1
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 50.0
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 52.9
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 57.6
PSO478G1110 Papaver somniferum HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 54.4
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.3e-07 59.3 66 56.1
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 2.3e-07 58.5 66 54.5
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 2.3e-07 58.5 65 55.4
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 51.5
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 2.3e-07 58.5 72 52.8
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.3e-07 58.5 67 52.2
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 55.9
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 2.9e-07 58.2 68 51.5
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 5.0e-07 57.4 68 50.0
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 5.0e-07 57.4 68 50.0
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 6.6e-07 57.0 68 48.5
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 6.6e-07 57.0 66 53.0
Potri.004G107600 Populus trichocarpa HOM05D002873 ORTHO05D002978 6.6e-07 57.0 68 52.9
GSVIVG01036482001 Vitis vinifera HOM05D002873 ORTHO05D002978 6.6e-07 57.0 65 52.3
C09p61100 Brassica napus HOM05D010783 ORTHO05D013000 8.6e-07 56.6 68 52.9
BolC9t58953H Brassica oleracea HOM05D010783 ORTHO05D013000 8.6e-07 56.6 68 52.9
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 8.6e-07 56.6 69 50.7
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 1.1e-06 56.2 68 48.5
CARHR076460 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.1e-06 56.2 67 50.7
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 1.1e-06 56.2 66 54.5
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 1.1e-06 56.2 60 56.7
PSO017G1587 Papaver somniferum HOM05D002873 ORTHO05D002978 1.1e-06 56.2 68 52.9
PSO017G6817 Papaver somniferum HOM05D002873 ORTHO05D002978 1.1e-06 56.2 68 52.9
Potri.004G107500 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.1e-06 56.2 68 52.9
BcaB08g36874 Brassica carinata HOM05D010783 ORTHO05D013000 1.5e-06 55.8 68 51.5
Sed0007664 Sechium edule HOM05D002873 ORTHO05D002978 1.5e-06 55.8 68 55.9
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 1.5e-06 55.8 66 53.0
Migut.N00988 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 53.0
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 2.5e-06 55.1 68 48.5
A10p23100 Brassica napus HOM05D010783 ORTHO05D013000 2.5e-06 55.1 68 51.5
FAN09G4825 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.5e-06 55.1 68 52.9
Medtr7g018280 Medicago truncatula HOM05D002873 ORTHO05D002978 2.5e-06 55.1 98 41.8
Sp6g28150 Schrenkiella parvula HOM05D010783 ORTHO05D013000 2.5e-06 55.1 68 51.5
Migut.N00991 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.3e-06 54.7 66 53.0
Hma1.2p1_0588F.1_g184450 Hydrangea macrophylla HOM05D002873 ORTHO05D002978 3.3e-06 54.7 60 55.0
Cfa007996 Carpinus fangiana HOM05D002873 ORTHO05D002978 4.2e-06 54.3 68 52.9
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 5.5e-06 53.9 68 47.1
FvH4_6g45802 Fragaria vesca HOM05D002873 ORTHO05D002978 5.5e-06 53.9 68 51.5
FAN05G0873 Fragaria x ananassa HOM05D002873 ORTHO05D002978 5.5e-06 53.9 68 51.5
FAN09G4276 Fragaria x ananassa HOM05D002873 ORTHO05D002978 5.5e-06 53.9 110 39.1
Sed0026500 Sechium edule HOM05D002873 ORTHO05D002978 5.5e-06 53.9 68 51.5
vmacro18088 Vaccinium macrocarpon HOM05D002873 ORTHO05D002978 5.5e-06 53.9 66 53.0
A02p03320 Brassica napus HOM05D010783 ORTHO05D013000 7.2e-06 53.5 68 51.5
BraA02t05303Z Brassica rapa HOM05D010783 ORTHO05D013000 7.2e-06 53.5 68 51.5
BraA10t44378Z Brassica rapa HOM05D010783 ORTHO05D013000 7.2e-06 53.5 68 50.0
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 7.2e-06 53.5 60 53.3
Atru.chr10.1869 Acer truncatum HOM05D002873 ORTHO05D002978 9.5e-06 53.1 68 51.5
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 9.5e-06 53.1 70 47.1
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 9.5e-06 53.1 68 47.1
Oeu032858.1 Olea europaea HOM05D002873 ORTHO05D002978 9.5e-06 53.1 66 50.0
Sed0012567 Sechium edule HOM05D002873 ORTHO05D002978 9.5e-06 53.1 68 54.4


User provided reference genes

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