Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 5.0e-66 254.2 121 100.0
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 2.7e-64 248.4 121 97.5
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 3.0e-63 245.0 121 95.9
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 8.8e-63 243.4 121 95.0
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 7.0e-60 233.8 121 90.1
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.2e-59 233.0 121 89.3
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.6e-59 232.6 121 88.4
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 9.4e-57 223.4 135 80.0
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 9.4e-57 223.4 135 80.0
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.2e-56 223.0 136 79.4
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 4.7e-56 221.1 121 84.3
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 2.3e-55 218.8 121 84.3
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 6.7e-55 217.2 121 83.5
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 6.7e-55 217.2 121 84.3
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.8e-55 216.9 121 84.3
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 1.5e-54 216.1 118 83.9
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 1.5e-54 216.1 121 82.6
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.5e-54 216.1 121 82.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 3.3e-54 214.9 121 82.6
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 5.7e-54 214.2 121 82.6
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 9.7e-54 213.4 120 82.5
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.3e-53 213.0 121 81.0
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 1.7e-53 212.6 121 81.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.7e-53 211.5 122 82.8
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 4.8e-53 211.1 121 81.0
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 8.2e-53 210.3 121 81.0
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.8e-52 209.1 119 80.7
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 1.8e-52 209.1 118 79.7
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 2.4e-52 208.8 121 81.0
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 7.0e-52 207.2 121 79.3
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 9.1e-52 206.8 121 79.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 2.0e-51 205.7 121 80.2
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 2.0e-51 205.7 121 79.3
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 2.0e-51 205.7 118 79.7
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 2.7e-51 205.3 121 79.3
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 2.7e-51 205.3 121 79.3
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 2.7e-51 205.3 121 78.5
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 2.7e-51 205.3 120 78.3
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 4.5e-51 204.5 114 81.6
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 5.9e-51 204.1 121 78.5
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 5.9e-51 204.1 119 78.2
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 7.7e-51 203.8 118 78.0
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.3e-50 203.0 117 79.5
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 1.7e-50 202.6 117 79.5
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.2e-50 202.2 116 80.2
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 2.9e-50 201.8 121 79.3
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.8e-50 201.4 107 84.1
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 3.8e-50 201.4 120 77.5
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 5.0e-50 201.1 121 75.2
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 5.0e-50 201.1 121 76.9
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 8.5e-50 200.3 121 77.7
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 2.5e-49 198.7 121 75.2
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 3.2e-49 198.4 117 77.8
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 3.2e-49 198.4 117 77.8
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.2e-49 198.4 120 80.8
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 4.2e-49 198.0 117 75.2
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 7.2e-49 197.2 120 77.5
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 1.6e-48 196.1 121 75.2
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 2.7e-48 195.3 121 73.6
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 4.7e-48 194.5 120 77.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 8.0e-48 193.7 121 72.7
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.0e-47 193.4 120 76.7
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 1.8e-47 192.6 121 75.2
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 3.0e-47 191.8 115 79.1
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.2e-47 191.0 121 71.9
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 5.2e-47 191.0 116 75.9
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 1.5e-46 189.5 118 74.6
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.0e-46 189.1 121 71.1
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 2.6e-46 188.7 118 72.9
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 5.7e-46 187.6 120 70.8
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 7.5e-46 187.2 120 70.8
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 9.8e-46 186.8 121 71.9
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 9.8e-46 186.8 120 71.7
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 9.8e-46 186.8 161 59.0
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 1.3e-45 186.4 121 71.9
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 1.7e-45 186.0 120 70.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.8e-45 185.3 120 72.5
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 6.3e-45 184.1 121 71.9
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.1e-44 183.3 122 68.9
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.1e-44 183.3 119 68.9
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 2.0e-43 179.1 107 74.8
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 2.7e-43 178.7 119 71.4
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 5.9e-43 177.6 121 69.4
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.7e-43 177.2 120 67.5
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.7e-42 176.0 117 70.9
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.8e-42 174.9 118 64.4
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 6.5e-42 174.1 116 72.4
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 8.5e-42 173.7 117 70.1
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 8.5e-42 173.7 117 70.1
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 5.5e-41 171.0 109 73.4
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 7.2e-41 170.6 107 72.0
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 9.5e-41 170.2 123 68.3
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 1.2e-40 169.9 109 72.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-40 169.1 109 72.5
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-40 169.1 109 72.5
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 2.1e-40 169.1 109 72.5
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 6.1e-40 167.5 216 44.9
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-39 166.8 109 71.6
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 1.0e-39 166.8 114 70.2
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.4e-39 166.4 107 72.9
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 2.3e-39 165.6 109 70.6
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.3e-39 165.6 109 70.6
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.3e-39 165.6 109 70.6
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 3.0e-39 165.2 109 71.6
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 3.0e-39 165.2 109 71.6
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 4.0e-39 164.9 122 69.7
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 8.8e-39 163.7 107 72.0
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 1.5e-38 162.9 107 72.0
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.5e-38 162.9 87 81.6
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.5e-38 162.9 87 81.6
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 7.5e-38 160.6 109 67.9
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 8.3e-37 157.1 92 79.3
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 2.4e-36 155.6 106 67.0
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 3.1e-36 155.2 109 63.3
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 4.1e-36 154.8 142 52.8
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 5.4e-36 154.5 110 67.3
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-35 153.3 117 63.2
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-35 153.3 117 63.2
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-35 153.3 117 63.2
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.7e-35 152.1 117 62.4
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.6e-34 147.1 122 56.6
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.6e-34 147.1 122 56.6
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.6e-32 142.9 122 58.2
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.1e-32 142.5 122 56.6
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 8.0e-32 140.6 118 54.2
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 9.8e-30 133.7 100 66.0
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 2.2e-29 132.5 78 78.2
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.8e-28 129.4 145 47.6
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 5.4e-28 127.9 76 78.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 9.2e-28 127.1 77 77.9
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 4.3e-25 118.2 119 47.1
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 6.2e-24 114.4 124 49.2
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 8.0e-24 114.0 89 58.4
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.5e-19 98.6 74 64.9
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.3e-18 96.7 71 63.4
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 2.1e-16 89.4 107 42.1
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 7.5e-14 80.9 59 59.3
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 6.0e-11 71.2 73 54.8
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.3e-07 59.3 34 82.4


User provided reference genes

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