Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1072600 Malus domestica HOM05D007258 ORTHO05D008852 2.1e-92 342.4 187 100.0
MD17G1063700 Malus domestica HOM05D007258 ORTHO05D008852 6.3e-60 234.6 174 70.7
MD17G1063100 Malus domestica HOM05D007258 ORTHO05D008852 1.6e-58 229.9 183 67.8
Prupe.3G250800 Prunus persica HOM05D007258 ORTHO05D008852 8.0e-55 217.6 170 68.2
MD17G1063300 Malus domestica HOM05D007258 ORTHO05D008852 6.5e-49 198.0 133 75.2
RcHm_v2.0_Chr2g0165201 Rosa chinensis HOM05D007258 ORTHO05D008852 3.2e-48 195.7 170 62.4
FvH4_6g46551 Fragaria vesca HOM05D007258 ORTHO05D008852 4.7e-47 191.8 169 60.9
FAN05G4223 Fragaria x ananassa HOM05D000830 ORTHO05D008852 4.7e-47 191.8 169 60.9
FAN02G1393 Fragaria x ananassa HOM05D000830 ORTHO05D008852 1.8e-46 189.9 169 60.4
FAN14G1076 Fragaria x ananassa HOM05D000830 ORTHO05D008852 5.2e-46 188.3 181 56.9
Haze_25378 Corylus avellana HOM05D007258 ORTHO05D008852 4.9e-44 181.8 167 55.7
Sabra04G0070300 Salix brachista HOM05D000830 ORTHO05D008852 4.9e-44 181.8 164 57.3
Potri.004G116800 Populus trichocarpa HOM05D007258 ORTHO05D008852 1.1e-43 180.6 164 56.7
QL02p066408 Quercus lobata HOM05D007258 ORTHO05D008852 1.4e-43 180.3 167 55.7
CANSAT64G1331 Cannabis sativa HOM05D007258 ORTHO05D008852 1.8e-43 179.9 167 55.1
Manes.02G057800 Manihot esculenta HOM05D007258 ORTHO05D008852 2.4e-43 179.5 168 54.8
CiPaw.03G085000 Carya illinoinensis HOM05D007258 ORTHO05D008852 1.2e-42 177.2 163 57.1
Glyma.13G053500 Glycine max HOM05D007258 ORTHO05D008852 1.6e-42 176.8 168 54.8
Rhsim08G0075900 Rhododendron simsii HOM05D007258 ORTHO05D008852 2.0e-42 176.4 163 56.4
THA.LOC104802980 Tarenaya hassleriana HOM05D007258 ORTHO05D008852 2.7e-42 176.0 168 54.8
VMungo0464G1058 Vigna mungo HOM05D007258 ORTHO05D008852 1.0e-41 174.1 178 53.4
Hma1.2p1_0069F.1_g037420 Hydrangea macrophylla HOM05D007258 ORTHO05D008852 1.3e-41 173.7 163 55.2
PGR004G1744 Punica granatum HOM05D007258 ORTHO05D008852 2.9e-41 172.6 167 54.5
BcaC05g30334 Brassica carinata HOM05D007258 ORTHO05D008852 2.5e-40 169.5 167 53.9
Lalb_Chr21g0318311 Lupinus albus HOM05D007258 ORTHO05D008852 2.5e-40 169.5 168 52.4
Psat1g066400 Pisum sativum HOM05D007258 ORTHO05D008852 2.5e-40 169.5 169 54.4
Phvul.004G041100 Phaseolus vulgaris HOM05D007258 ORTHO05D008852 3.3e-40 169.1 178 51.1
Duzib138G1000 Durio zibethinus HOM05D007258 ORTHO05D008852 4.3e-40 168.7 168 51.8
Lsat_1_v5_gn_4_173160 Lactuca sativa HOM05D007258 ORTHO05D008852 4.3e-40 168.7 169 54.4
Ciclev10012686m.g Citrus clementina HOM05D007258 ORTHO05D008852 5.6e-40 168.3 168 53.0
Aa31LG5G12750 Aethionema arabicum HOM05D007258 ORTHO05D008852 1.2e-39 167.2 169 53.3
Lj2g0017705 Lotus japonicus HOM05D007258 ORTHO05D008852 1.2e-39 167.2 168 53.0
TPR.G4313 Trifolium pratense HOM05D007258 ORTHO05D008852 1.2e-39 167.2 169 53.3
Cc07_g04400 Coffea canephora HOM05D007258 ORTHO05D008852 2.1e-39 166.4 166 53.6
Carub.0003s0134 Capsella rubella HOM05D007258 ORTHO05D008852 2.8e-39 166.0 169 52.7
CSS0017666 Camellia sinensis var. sinensis HOM05D007258 ORTHO05D008852 3.6e-39 165.6 169 51.5
Nn4g23475 Nelumbo nucifera HOM05D007258 ORTHO05D008852 4.7e-39 165.2 165 53.3
TWI34G1392 Tripterygium wilfordii HOM05D007258 ORTHO05D008852 4.7e-39 165.2 168 51.8
AT3G02220 Arabidopsis thaliana HOM05D007258 ORTHO05D008852 8.0e-39 164.5 169 52.7
BcaC05g30335 Brassica carinata HOM05D007258 ORTHO05D008852 8.0e-39 164.5 169 52.7
A05p45100 Brassica napus HOM05D007258 ORTHO05D008852 8.0e-39 164.5 169 52.7
C09p75600 Brassica napus HOM05D007258 ORTHO05D008852 8.0e-39 164.5 169 52.7
BolC5t35098H Brassica oleracea HOM05D007258 ORTHO05D008852 8.0e-39 164.5 169 52.7
BraA05t23151Z Brassica rapa HOM05D007258 ORTHO05D008852 8.0e-39 164.5 169 52.7
CAN.G497.87 Capsicum annuum HOM05D007258 ORTHO05D008852 8.0e-39 164.5 163 52.1
Thecc.04G103600 Theobroma cacao HOM05D007258 ORTHO05D008852 8.0e-39 164.5 168 50.6
Sp3g01290 Schrenkiella parvula HOM05D007258 ORTHO05D008852 1.4e-38 163.7 169 52.1
Sc11g0008720 Simmondsia chinensis HOM05D007258 ORTHO05D008852 1.4e-38 163.7 166 51.2
AL3G11470 Arabidopsis lyrata HOM05D007258 ORTHO05D008852 1.8e-38 163.3 169 51.5
arahy.Tifrunner.gnm1.ann1.GI8EHX Arachis hypogaea HOM05D007258 ORTHO05D008852 2.3e-38 162.9 178 50.6
arahy.Tifrunner.gnm1.ann1.TJ02B2 Arachis hypogaea HOM05D007258 ORTHO05D008852 2.3e-38 162.9 178 50.6
Thhalv10021265m.g Eutrema salsugineum HOM05D007258 ORTHO05D008852 2.3e-38 162.9 169 52.1
Glyma.19G033200 Glycine max HOM05D007258 ORTHO05D008852 4.0e-38 162.2 87 81.6
Nitab4.5_0009044g0050 Nicotiana tabacum HOM05D007258 ORTHO05D008852 4.0e-38 162.2 162 51.9
CARHR076190 Cardamine hirsuta HOM05D007258 ORTHO05D008852 5.2e-38 161.8 170 52.4
HanXRQChr09g0264921 Helianthus annuus HOM05D007258 ORTHO05D008852 5.2e-38 161.8 171 50.3
Medtr6g015855 Medicago truncatula HOM05D007258 ORTHO05D008852 5.2e-38 161.8 169 50.9
AUR62009496 Chenopodium quinoa HOM05D007258 ORTHO05D008852 6.8e-38 161.4 167 47.9
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 6.8e-38 161.4 166 50.6
ECA232G3790 Erigeron canadensis HOM05D007258 ORTHO05D008852 1.5e-37 160.2 170 52.9
Os01g0763000 Oryza sativa ssp. japonica HOM05D007258 ORTHO05D008852 1.5e-37 160.2 171 52.0
Gorai.001G208500 Gossypium raimondii HOM05D007258 ORTHO05D008852 2.0e-37 159.8 168 49.4
Solyc02g089100.3 Solanum lycopersicum HOM05D007258 ORTHO05D008852 3.4e-37 159.1 163 50.3
Cpa.g.sc14.201 Carica papaya HOM05D007258 ORTHO05D008852 5.7e-37 158.3 169 47.9
PGSC0003DMG400001370 Solanum tuberosum HOM05D007258 ORTHO05D008852 5.7e-37 158.3 172 50.0
Gohir.D07G187600 Gossypium hirsutum HOM05D007258 ORTHO05D008852 7.5e-37 157.9 168 48.8
GSVIVG01036568001 Vitis vinifera HOM05D007258 ORTHO05D008852 9.8e-37 157.5 163 51.5
Cfa010690 Carpinus fangiana HOM05D007258 ORTHO05D008852 1.3e-36 157.1 133 57.1
Sopen02g033890 Solanum pennellii HOM05D007258 ORTHO05D008852 2.2e-36 156.4 163 49.7
unitig_32.g11768 Utricularia gibba HOM05D007258 ORTHO05D008852 2.2e-36 156.4 168 51.2
Actinidia17595 Actinidia chinensis HOM05D007258 ORTHO05D008852 4.9e-36 155.2 153 55.6
Ca_20770_v3 Cicer arietinum L. HOM05D000600 ORTHO05D000432 4.9e-36 155.2 140 55.7
Sed0003620 Sechium edule HOM05D007258 ORTHO05D008852 4.9e-36 155.2 171 50.3
CDE07G1188 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 6.4e-36 154.8 142 54.9
Migut.K01261 Erythranthe guttata HOM05D007258 ORTHO05D008852 6.4e-36 154.8 163 49.1
Eucgr.L02288 Eucalyptus grandis HOM05D007258 ORTHO05D008852 6.4e-36 154.8 181 50.3
Hund16216 Selenicereus undatus HOM05D007258 ORTHO05D008852 2.4e-35 152.9 167 49.1
COL.COLO4_03895 Corchorus olitorius HOM05D007258 ORTHO05D008852 9.2e-35 151.0 87 75.9
Gohir.A07G181100 Gossypium hirsutum HOM05D007258 ORTHO05D008852 9.2e-35 151.0 163 49.1
CsaV3_5G038620 Cucumis sativus L. HOM05D007258 ORTHO05D008852 2.7e-34 149.4 154 52.6
MELO3C022042.2 Cucumis melo HOM05D007258 ORTHO05D008852 3.5e-34 149.1 163 49.7
HPP92_001847 Vanilla planifolia HOM05D007258 ORTHO05D008852 5.9e-34 148.3 143 51.0
Aqoxy3G00517 Aquilegia oxysepala HOM05D007258 ORTHO05D008852 7.8e-34 147.9 164 48.8
Haze_03284 Corylus avellana HOM05D007258 ORTHO05D008852 3.9e-33 145.6 151 51.0
Zm00001eb152360 Zea mays HOM05D007258 ORTHO05D008852 5.0e-33 145.2 112 57.1
MSTRG.15441 Avicennia marina HOM05D007258 ORTHO05D008852 1.5e-32 143.7 140 51.4
PSO017G7301 Papaver somniferum HOM05D007258 ORTHO05D008852 1.5e-32 143.7 163 46.0
Oeu004419.1 Olea europaea HOM05D007258 ORTHO05D008852 1.9e-32 143.3 90 68.9
Atru.BG.153.p Acer truncatum HOM05D007258 ORTHO05D008852 3.3e-32 142.5 78 78.2
PSO478G0672 Papaver somniferum HOM05D007258 ORTHO05D008852 4.3e-32 142.1 163 45.4
Eucgr.I02051 Eucalyptus grandis HOM05D007258 ORTHO05D008852 5.6e-32 141.7 148 52.0
SEGI_41097 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 4.7e-31 138.7 150 50.0
EL10Ac2g04457 Beta vulgaris HOM05D007258 ORTHO05D008852 1.0e-30 137.5 191 46.6
TAR374G0815 Trochodendron aralioides HOM05D007258 ORTHO05D008852 1.4e-30 137.1 147 49.0
FAN09G2101 Fragaria x ananassa HOM05D000830 ORTHO05D008852 1.8e-30 136.7 141 56.0
Haze_14398 Corylus avellana HOM05D000041 ORTHO05D000061 5.8e-29 131.7 104 61.5
Pp3c24_10 Physcomitrium patens HOM05D007258 ORTHO05D008852 1.3e-25 120.6 158 41.8
CBR_g1012 Chara braunii HOM05D007258 ORTHO05D008852 8.6e-25 117.9 87 57.5
Nitab4.5_0005120g0080 Nicotiana tabacum HOM05D007258 ORTHO05D008852 1.2e-23 114.0 178 41.0
AagrBONN_evm.TU.Sc2ySwM_117.3322 Anthoceros agrestis HOM05D007258 ORTHO05D008852 1.8e-22 110.2 116 45.7
ClCG11G004890 Citrullus lanatus HOM05D007258 ORTHO05D008852 2.3e-22 109.8 59 78.0
BcaB03g16148 Brassica carinata HOM05D007258 ORTHO05D008852 1.2e-21 107.5 76 64.5
CDE04G0513 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 1.4e-19 100.5 136 42.6
Lsat_1_v5_gn_4_141000 Lactuca sativa HOM05D007258 ORTHO05D008852 3.3e-16 89.4 57 70.2
Lsat_1_v5_gn_7_113001 Lactuca sativa HOM05D007258 ORTHO05D008852 5.2e-14 82.0 56 67.9
ATR0037G004 Amborella trichopoda HOM05D007258 ORTHO05D008852 1.2e-13 80.9 46 71.7


User provided reference genes

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