Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 9.4e-139 496.9 257 100.0
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 2.3e-97 359.4 238 81.1
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 3.4e-96 355.5 242 78.5
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 4.9e-95 351.7 246 75.6
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 6.4e-95 351.3 243 76.1
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 1.1e-94 350.5 242 77.3
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 1.8e-94 349.7 242 76.0
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.8e-94 349.7 242 76.4
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 3.2e-94 349.0 242 78.1
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 5.4e-94 348.2 242 76.4
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 3.5e-93 345.5 258 72.1
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 7.8e-93 344.4 242 76.0
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 7.8e-93 344.4 242 75.6
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 1.0e-92 344.0 242 75.2
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 2.3e-92 342.8 242 76.0
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 2.3e-92 342.8 242 76.0
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 5.0e-92 341.7 255 72.9
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 6.6e-92 341.3 242 74.8
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 1.1e-91 340.5 194 90.2
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 2.5e-91 339.3 194 90.2
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 7.3e-91 337.8 242 75.6
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 7.3e-91 337.8 242 74.0
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 7.3e-91 337.8 242 73.1
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 6.2e-90 334.7 243 72.4
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 1.0e-89 334.0 194 87.1
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 1.8e-89 333.2 242 72.7
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 4.0e-89 332.0 194 87.1
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 4.0e-89 332.0 242 72.3
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.2e-88 330.5 194 85.1
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.5e-88 330.1 194 86.1
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 3.4e-88 328.9 194 85.6
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.4e-88 328.9 194 85.6
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.4e-88 328.9 194 85.6
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 1.3e-87 327.0 253 70.4
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.7e-87 326.6 194 84.5
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.7e-87 326.6 194 84.5
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 1.7e-87 326.6 194 85.6
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 2.9e-87 325.9 242 72.3
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 6.4e-87 324.7 194 84.5
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 8.3e-87 324.3 242 72.7
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 1.1e-86 323.9 242 71.9
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.4e-86 323.6 194 85.6
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.9e-86 323.2 194 85.1
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.9e-86 323.2 193 85.0
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 2.4e-86 322.8 194 85.1
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 2.4e-86 322.8 194 84.5
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 3.2e-86 322.4 242 70.7
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 4.1e-86 322.0 243 72.4
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 4.1e-86 322.0 243 72.4
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 5.4e-86 321.6 194 84.0
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 9.2e-86 320.9 194 83.5
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 1.2e-85 320.5 194 83.0
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 1.2e-85 320.5 243 72.0
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 1.2e-85 320.5 194 83.0
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 2.0e-85 319.7 243 72.0
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 2.0e-85 319.7 242 69.4
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 2.0e-85 319.7 194 84.0
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 3.5e-85 318.9 194 84.0
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 4.6e-85 318.5 194 84.0
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 4.6e-85 318.5 194 84.0
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 6.0e-85 318.2 194 82.5
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 7.8e-85 317.8 242 69.0
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 1.3e-84 317.0 194 82.5
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 1.3e-84 317.0 194 84.0
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 8.6e-84 314.3 194 83.0
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.1e-83 313.9 194 82.0
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 1.1e-83 313.9 238 69.7
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.5e-83 313.5 194 80.9
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.9e-83 313.2 194 80.9
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 1.9e-83 313.2 194 83.5
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 3.3e-83 312.4 194 81.4
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 4.3e-83 312.0 194 80.4
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 1.6e-82 310.1 194 79.9
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 1.8e-81 306.6 239 69.9
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 3.1e-81 305.8 194 81.4
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 3.1e-81 305.8 194 80.9
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 3.1e-81 305.8 194 80.9
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 4.0e-81 305.4 194 80.4
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 5.2e-81 305.1 194 80.9
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 6.8e-81 304.7 194 80.9
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 8.9e-81 304.3 194 80.4
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 8.9e-81 304.3 200 79.0
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 8.9e-81 304.3 194 79.9
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 2.6e-80 302.8 194 80.4
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 2.6e-80 302.8 194 76.3
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 3.4e-80 302.4 194 80.4
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 3.4e-80 302.4 194 80.4
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 7.5e-80 301.2 194 78.9
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 1.3e-79 300.4 194 79.9
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 4.9e-79 298.5 194 78.9
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 8.3e-79 297.7 194 78.4
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 3.5e-77 292.4 246 67.9
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.6e-74 283.5 236 69.1
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 8.9e-73 277.7 242 62.8
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.9e-70 270.0 221 67.0
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 6.2e-66 255.0 195 70.3
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 3.2e-62 242.7 245 55.5
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 3.2e-62 242.7 240 54.2
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 1.6e-61 240.4 243 57.2
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 3.3e-59 232.6 241 53.9
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 8.1e-58 228.0 238 56.3
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.2e-55 219.9 160 73.8
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 4.2e-54 215.7 238 57.6
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 9.0e-49 198.0 147 73.5
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 4.5e-48 195.7 147 74.8
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 5.8e-48 195.3 147 74.1
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 1.4e-46 190.7 270 46.3
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.6e-42 177.2 116 77.6
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 1.9e-38 163.7 95 82.1
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.8e-36 157.1 94 80.9
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 2.3e-36 156.8 129 67.4
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 4.3e-35 152.5 95 81.1
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 1.0e-28 131.3 278 31.7
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.1e-25 119.8 101 66.3
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.1e-25 119.8 101 66.3
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 3.4e-24 116.3 106 65.1
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 5.7e-19 99.0 63 77.8
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 5.2e-12 75.9 45 88.9
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 8.8e-12 75.1 182 32.4
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 1.5e-11 74.3 146 33.6
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.8e-09 67.4 133 35.3
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 3.2e-06 56.6 38 76.3
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 4.2e-06 56.2 36 77.8


User provided reference genes

Program Settings