Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1057100 Malus domestica HOM05D006813 ORTHO05D008657 1.7e-96 355.9 172 100.0
MD09G1056700 Malus domestica HOM05D006813 ORTHO05D008657 2.2e-51 206.1 158 68.4
MD17G1054200 Malus domestica HOM05D006813 ORTHO05D008657 6.4e-51 204.5 158 67.7
FvH4_6g47790 Fragaria vesca HOM05D006813 ORTHO05D008657 4.5e-44 181.8 161 59.6
FAN14G3538 Fragaria x ananassa HOM05D006813 ORTHO05D008657 4.5e-44 181.8 161 59.6
RcHm_v2.0_Chr2g0166981 Rosa chinensis HOM05D006813 ORTHO05D008657 4.5e-44 181.8 161 59.0
Dinv11496 Davidia involucrata HOM05D006813 ORTHO05D008657 9.3e-42 174.1 158 58.2
FAN05G4860 Fragaria x ananassa HOM05D006813 ORTHO05D008657 1.6e-41 173.3 190 51.1
Gohir.D04G046200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 2.1e-41 172.9 158 56.3
Gorai.012G051400 Gossypium raimondii HOM05D006813 ORTHO05D008657 2.1e-41 172.9 158 56.3
CSS0034099 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 2.7e-41 172.6 149 58.4
CSS0013443 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 7.9e-41 171.0 150 58.0
Ciclev10013781m.g Citrus clementina HOM05D006813 ORTHO05D008657 7.9e-41 171.0 151 58.9
Gohir.A05G369200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 1.0e-40 170.6 158 55.7
QL02p085115 Quercus lobata HOM05D006813 ORTHO05D008657 1.3e-40 170.2 160 56.2
Haze_14484 Corylus avellana HOM05D006813 ORTHO05D008657 3.9e-40 168.7 160 56.9
Dinv33795 Davidia involucrata HOM05D006813 ORTHO05D008657 3.9e-40 168.7 158 55.7
Sabra04G0067300 Salix brachista HOM05D006813 ORTHO05D008657 3.9e-40 168.7 158 55.7
Cfa007604 Carpinus fangiana HOM05D006813 ORTHO05D008657 8.7e-40 167.5 160 56.9
THA.LOC104805490 Tarenaya hassleriana HOM05D006813 ORTHO05D008657 8.7e-40 167.5 158 55.1
TWI34G0739 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 1.1e-39 167.2 150 56.0
Nitab4.5_0000568g0240 Nicotiana tabacum HOM05D006813 ORTHO05D008657 1.9e-39 166.4 158 55.1
COL.COLO4_12242 Corchorus olitorius HOM05D006813 ORTHO05D008657 5.6e-39 164.9 158 54.4
Potri.004G120900 Populus trichocarpa HOM05D006813 ORTHO05D008657 5.6e-39 164.9 158 55.1
Nitab4.5_0001591g0010 Nicotiana tabacum HOM05D006813 ORTHO05D008657 7.4e-39 164.5 158 54.4
Peaxi162Scf00166g00933 Petunia axillaris HOM05D006813 ORTHO05D008657 7.4e-39 164.5 158 55.1
CANSAT64G1527 Cannabis sativa HOM05D006813 ORTHO05D008657 2.8e-38 162.5 152 55.3
ECA232G0359 Erigeron canadensis HOM05D006813 ORTHO05D008657 2.8e-38 162.5 153 54.2
TWI34G0213 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 2.8e-38 162.5 150 56.0
Manes.02G049900 Manihot esculenta HOM05D006813 ORTHO05D008657 3.7e-38 162.2 158 53.2
CAN.G206.184 Capsicum annuum HOM05D006813 ORTHO05D008657 8.2e-38 161.0 161 54.0
PGSC0003DMG400001435 Solanum tuberosum HOM05D006813 ORTHO05D008657 1.1e-37 160.6 158 54.4
MELO3C022015.2 Cucumis melo HOM05D006813 ORTHO05D008657 1.4e-37 160.2 166 53.6
DCAR_025399 Daucus carota HOM05D006813 ORTHO05D008657 1.4e-37 160.2 158 55.1
Atru.chr8.345 Acer truncatum HOM05D006813 ORTHO05D008657 1.8e-37 159.8 157 53.5
AUR62018125 Chenopodium quinoa HOM05D006813 ORTHO05D008657 1.8e-37 159.8 160 55.0
AUR62034457 Chenopodium quinoa HOM05D006813 ORTHO05D008657 1.8e-37 159.8 160 55.0
arahy.Tifrunner.gnm1.ann1.DSSH0H Arachis hypogaea HOM05D006813 ORTHO05D008657 2.4e-37 159.5 160 53.1
arahy.Tifrunner.gnm1.ann1.GGC6H3 Arachis hypogaea HOM05D006813 ORTHO05D008657 2.4e-37 159.5 160 53.1
Sopen02g033040 Solanum pennellii HOM05D006813 ORTHO05D008657 2.4e-37 159.5 159 54.1
TAR371G1040 Trochodendron aralioides HOM05D006813 ORTHO05D008657 2.4e-37 159.5 158 56.3
Actinidia06110 Actinidia chinensis HOM05D006813 ORTHO05D008657 4.0e-37 158.7 149 54.4
CsaV3_5G038340 Cucumis sativus L. HOM05D006813 ORTHO05D008657 4.0e-37 158.7 166 53.0
Solyc02g088350.4 Solanum lycopersicum HOM05D006813 ORTHO05D008657 4.0e-37 158.7 159 53.5
EL10Ac2g03036 Beta vulgaris HOM05D006813 ORTHO05D008657 5.3e-37 158.3 158 53.2
ClCG11G004590 Citrullus lanatus HOM05D006813 ORTHO05D008657 5.3e-37 158.3 153 57.5
Glyma.13G060100 Glycine max HOM05D006813 ORTHO05D008657 6.9e-37 157.9 158 51.9
Glyma.19G026800 Glycine max HOM05D006813 ORTHO05D008657 9.0e-37 157.5 158 51.3
Thecc.04G088600 Theobroma cacao HOM05D006813 ORTHO05D008657 9.0e-37 157.5 158 55.1
BcaC06g30887 Brassica carinata HOM05D006813 ORTHO05D008657 2.0e-36 156.4 158 52.5
Rhsim10G0035200 Rhododendron simsii HOM05D006813 ORTHO05D008657 2.0e-36 156.4 147 53.7
Sp2g17800 Schrenkiella parvula HOM05D006813 ORTHO05D008657 2.6e-36 156.0 153 53.6
Sc14g0006120 Simmondsia chinensis HOM05D006813 ORTHO05D008657 2.6e-36 156.0 158 50.0
AL5G19100 Arabidopsis lyrata HOM05D006813 ORTHO05D008657 3.4e-36 155.6 153 53.6
AT3G29185 Arabidopsis thaliana HOM05D006813 ORTHO05D008657 3.4e-36 155.6 153 54.2
C07p38090 Brassica napus HOM05D006813 ORTHO05D008657 3.4e-36 155.6 153 52.9
BolC7t44331H Brassica oleracea HOM05D006813 ORTHO05D008657 3.4e-36 155.6 153 52.9
Lsat_1_v5_gn_4_170001 Lactuca sativa HOM05D006813 ORTHO05D008657 3.4e-36 155.6 151 53.6
MSTRG.3341 Avicennia marina HOM05D006813 ORTHO05D008657 4.5e-36 155.2 153 52.9
A06p40070 Brassica napus HOM05D006813 ORTHO05D008657 4.5e-36 155.2 153 52.9
BraA06t26922Z Brassica rapa HOM05D006813 ORTHO05D008657 4.5e-36 155.2 153 52.9
Cc07_g03730 Coffea canephora HOM05D006813 ORTHO05D008657 4.5e-36 155.2 151 51.7
Lalb_Chr02g0159111 Lupinus albus HOM05D006813 ORTHO05D008657 4.5e-36 155.2 158 52.5
vmacro05678 Vaccinium macrocarpon HOM05D006813 ORTHO05D008657 4.5e-36 155.2 149 53.0
VMungo0464G0720 Vigna mungo HOM05D006813 ORTHO05D008657 5.8e-36 154.8 158 50.6
Nn4g23302 Nelumbo nucifera HOM05D006813 ORTHO05D008657 7.6e-36 154.5 151 52.3
Prupe.3G262000 Prunus persica HOM05D006813 ORTHO05D008657 1.0e-35 154.1 128 60.2
Thhalv10004355m.g Eutrema salsugineum HOM05D006813 ORTHO05D008657 1.3e-35 153.7 159 52.2
Actinidia01957 Actinidia chinensis HOM05D006813 ORTHO05D008657 1.7e-35 153.3 149 53.0
Duzib264G0095 Durio zibethinus HOM05D006813 ORTHO05D008657 1.7e-35 153.3 158 53.2
PGR004G2573 Punica granatum HOM05D006813 ORTHO05D008657 1.7e-35 153.3 160 52.5
CiPaw.03G021100 Carya illinoinensis HOM05D006813 ORTHO05D008657 3.8e-35 152.1 160 51.2
GSVIVG01011472001 Vitis vinifera HOM05D006813 ORTHO05D008657 3.8e-35 152.1 158 51.9
HanXRQChr09g0264041 Helianthus annuus HOM05D006813 ORTHO05D008657 6.5e-35 151.4 152 52.6
BcaC06g33677 Brassica carinata HOM05D006813 ORTHO05D008657 1.4e-34 150.2 147 53.1
SalBow1G5727 Salvia bowleyana HOM05D006813 ORTHO05D008657 1.9e-34 149.8 151 53.6
TPR.G26959 Trifolium pratense HOM05D006813 ORTHO05D008657 2.5e-34 149.4 151 51.0
MBI07_g46965_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 3.2e-34 149.1 157 51.0
PSO063G3583 Papaver somniferum HOM05D006813 ORTHO05D008657 3.2e-34 149.1 152 52.0
CARHR152350 Cardamine hirsuta HOM05D006813 ORTHO05D008657 4.2e-34 148.7 154 52.6
Phvul.004G032400 Phaseolus vulgaris HOM05D006813 ORTHO05D008657 5.5e-34 148.3 158 49.4
Aqoxy3G03517 Aquilegia oxysepala HOM05D006813 ORTHO05D008657 1.2e-33 147.1 158 50.0
Migut.K01297 Erythranthe guttata HOM05D006813 ORTHO05D008657 1.6e-33 146.7 151 51.0
Psat1g069960 Pisum sativum HOM05D006813 ORTHO05D008657 1.6e-33 146.7 150 51.3
Aa31LG2G4040 Aethionema arabicum HOM05D006813 ORTHO05D008657 2.1e-33 146.4 178 47.2
Oeu023718.1 Olea europaea HOM05D006813 ORTHO05D008657 2.1e-33 146.4 150 52.7
PSO063G1088 Papaver somniferum HOM05D006813 ORTHO05D008657 2.1e-33 146.4 152 50.7
Lj2g0012161 Lotus japonicus HOM05D006813 ORTHO05D008657 6.0e-33 144.8 151 50.3
Medtr6g013150 Medicago truncatula HOM05D006813 ORTHO05D008657 6.0e-33 144.8 151 51.0
SalBow1G0723 Salvia bowleyana HOM05D006813 ORTHO05D008657 6.0e-33 144.8 151 53.6
Hund13179 Selenicereus undatus HOM05D006813 ORTHO05D008657 7.9e-33 144.4 149 50.3
ATR0730G176 Amborella trichopoda HOM05D006813 ORTHO05D008657 1.0e-32 144.1 158 50.6
HPP92_015887 Vanilla planifolia HOM05D006813 ORTHO05D008657 1.9e-31 139.8 158 49.4
Carub.0005s0792 Capsella rubella HOM05D006813 ORTHO05D008657 2.5e-31 139.4 136 53.7
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 4.3e-31 138.7 154 48.7
Os03g0758900 Oryza sativa ssp. japonica HOM05D006813 ORTHO05D008657 7.4e-31 137.9 157 48.4
CDE04G0700 Ceratophyllum demersum HOM05D006813 ORTHO05D008657 9.7e-31 137.5 150 49.3
SGA_v2.0_scaffold154G37082 Striga asiatica HOM05D006813 ORTHO05D008657 2.2e-30 136.3 150 50.0
Zm00001eb057930 Zea mays HOM05D006813 ORTHO05D008657 3.1e-29 132.5 157 47.8
Lju41A8T104 Lonicera japonica HOM05D006813 ORTHO05D008657 5.3e-29 131.7 122 56.6
Sed0010301 Sechium edule HOM05D006813 ORTHO05D008657 7.6e-28 127.9 137 50.4
MBI07_g25549_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 6.3e-22 108.2 157 43.3
Mapoly0015s0143 Marchantia polymorpha HOM05D006813 ORTHO05D008657 4.2e-18 95.5 152 35.5
SEGI_06128 Sequoiadendron giganteum HOM05D006813 ORTHO05D008657 1.2e-17 94.0 148 37.8
Zm00001eb214510 Zea mays HOM05D006813 ORTHO05D008657 1.0e-16 90.9 158 39.2
Ca_04860_v3 Cicer arietinum L. HOM05D006813 ORTHO05D002040 8.8e-16 87.8 124 39.5
FAN10G0034 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.5e-15 87.0 61 62.3
Pp3c27_2000 Physcomitrium patens HOM05D006813 ORTHO05D008657 6.3e-14 81.6 151 33.1
Haze_14493 Corylus avellana HOM05D006813 ORTHO05D008657 1.2e-12 77.4 63 57.1
SMO347G0068 Selaginella moellendorffii HOM05D006813 ORTHO05D008657 1.1e-10 70.9 158 26.6
AagrBONN_evm.TU.Sc2ySwM_117.3657 Anthoceros agrestis HOM05D006813 ORTHO05D008657 6.7e-08 61.6 117 32.5
HPP92_015898 Vanilla planifolia HOM05D006813 ORTHO05D008657 8.8e-08 61.2 61 45.9
HanXRQChr08g0223741 Helianthus annuus HOM05D006813 ORTHO05D008657 1.3e-06 57.4 57 47.4


User provided reference genes

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