Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 4427.9 2218 100.0
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 4073.5 2222 92.3
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 3441.0 2226 78.4
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 3337.7 2228 76.8
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 3318.9 2228 76.3
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 3129.3 1827 86.4
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 3058.5 2236 69.5
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 3052.3 2234 69.8
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 3041.1 2235 69.7
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 3003.8 2236 69.1
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2997.2 2242 67.9
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2948.3 2242 67.8
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2906.7 2236 66.3
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2887.8 2244 66.1
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2869.0 1897 76.8
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2860.9 2243 65.3
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2850.1 2241 65.5
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2848.9 2246 65.8
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2839.7 2236 65.2
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2831.2 2229 64.9
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2822.0 2244 65.0
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2820.4 2242 64.7
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2816.2 2240 64.7
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2803.5 2255 64.3
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2786.9 2237 64.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2765.7 2234 64.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2764.6 2238 64.1
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2764.2 2243 63.3
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2761.9 2246 64.1
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2753.8 2241 63.1
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2689.4 2241 62.9
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2687.1 2240 62.8
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2684.8 2212 62.8
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2656.7 2239 61.8
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2650.2 2235 61.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2640.5 2241 61.0
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2636.7 2231 61.5
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2621.3 2242 61.2
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2608.2 2236 61.3
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2608.2 2250 61.6
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2603.5 2242 61.3
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2602.0 2242 60.3
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2592.8 2233 60.7
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2588.5 2244 61.1
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2587.8 2245 61.0
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2579.7 2242 60.6
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2575.4 2243 60.9
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2575.0 2238 59.6
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2575.0 2244 61.1
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2570.0 2240 60.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2561.2 2265 59.2
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2555.4 2246 60.4
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2549.6 2230 59.8
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2546.2 2244 59.3
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2539.2 2250 59.0
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2537.3 2237 58.9
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2530.4 2237 58.6
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2528.8 2263 59.5
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2518.8 2237 58.5
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2517.7 2242 58.7
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2514.2 2244 58.9
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2483.4 2223 58.8
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2480.3 2230 58.6
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2471.8 2229 58.7
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2453.3 2244 57.3
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2451.0 2269 58.3
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2435.2 2245 57.1
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2431.4 2237 59.5
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2423.7 2233 57.9
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2421.0 2238 58.9
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2416.0 2240 58.8
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2415.6 2233 57.6
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2413.6 2238 58.9
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2407.9 1827 66.9
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2404.8 2238 58.4
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2404.8 2238 58.4
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2402.1 2239 58.6
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2397.5 2234 58.4
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2397.5 2234 58.4
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2325.8 1833 65.7
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2319.3 2343 53.8
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2280.0 2255 55.6
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2277.7 2238 56.3
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2260.3 2069 59.4
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2201.4 1717 65.8
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2150.6 2319 51.7
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2123.2 2254 52.4
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2080.4 2210 52.9
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2067.0 2237 51.5
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1855.5 1432 68.2
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1791.9 2391 43.6
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1614.0 1710 52.7
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1599.7 1371 61.3
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1487.6 2387 39.9
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1450.3 2341 39.0
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1364.4 1203 60.5
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1340.1 2201 39.1
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1334.7 1026 66.5
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1328.2 1163 61.3
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1325.1 2266 37.2
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1199.1 948 65.3
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1181.0 1068 57.2
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1135.9 1430 46.6
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.2e-285 988.0 790 65.9
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 7.5e-277 958.7 3087 28.2
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 5.6e-272 942.6 1027 52.8
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 4.0e-246 856.7 868 53.5
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.9e-225 786.9 727 58.2
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 3.2e-219 767.3 1342 37.3
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 1.2e-184 652.5 1009 42.7
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 4.3e-155 554.3 2539 25.5
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 9.8e-152 543.1 443 60.7
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 5.5e-110 404.4 382 56.5
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 6.5e-79 301.2 340 50.6
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 8.5e-79 300.8 290 59.3
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.2e-69 270.4 319 48.3
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 3.1e-65 255.8 759 27.9
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 2.7e-64 252.7 334 45.8
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-60 240.4 235 55.3
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 6.3e-58 231.5 178 70.2
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 1.9e-54 219.9 243 51.0
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 6.6e-47 194.9 287 41.1
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 9.8e-43 181.0 140 66.4
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 9.5e-38 164.5 233 43.8
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.0e-36 159.1 489 27.2
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 2.6e-35 156.4 99 78.8
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 6.6e-31 141.7 118 59.3
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 2.5e-30 139.8 255 36.1
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 1.5e-27 130.6 178 47.8
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.9e-25 123.6 115 58.3
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 7.1e-25 121.7 113 60.2
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.8e-16 91.7 109 44.0
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 2.0e-11 77.0 338 22.8


User provided reference genes

Program Settings