Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1047900 Malus domestica HOM05D007272 ORTHO05D009305 3.1e-306 1054.3 523 100.0
MD17G1048000 Malus domestica HOM05D007272 ORTHO05D009305 4.5e-148 528.9 521 56.4
Prupe.3G271100 Prunus persica HOM05D007272 ORTHO05D009305 4.5e-148 528.9 518 57.5
FAN05G2713 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.3e-123 447.6 524 51.0
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 3.0e-123 446.4 525 50.5
FvH4_6g49170 Fragaria vesca HOM05D007272 ORTHO05D009305 9.5e-122 441.4 524 50.4
FAN14G5197 Fragaria x ananassa HOM05D007272 ORTHO05D009305 1.4e-120 437.6 522 50.0
RcHm_v2.0_Chr2g0169041 Rosa chinensis HOM05D007272 ORTHO05D009305 1.8e-120 437.2 522 49.8
GSVIVG01011351001 Vitis vinifera HOM05D007272 ORTHO05D009305 1.3e-115 421.0 517 47.0
Manes.17G022200 Manihot esculenta HOM05D007272 ORTHO05D009305 2.3e-115 420.2 520 46.3
Cfa007518 Carpinus fangiana HOM05D007272 ORTHO05D009305 4.3e-114 416.0 518 47.5
Haze_14576 Corylus avellana HOM05D007272 ORTHO05D009305 5.6e-114 415.6 515 47.8
TWI34G0655 Tripterygium wilfordii HOM05D007272 ORTHO05D009305 2.1e-113 413.7 517 47.4
Potri.017G079100 Populus trichocarpa HOM05D007272 ORTHO05D009305 2.3e-112 410.2 518 47.5
Actinidia23567 Actinidia chinensis HOM05D007272 ORTHO05D009305 6.8e-112 408.7 517 46.2
Sabra17G0070200 Salix brachista HOM05D007272 ORTHO05D009305 3.4e-111 406.4 518 47.1
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 3.2e-109 399.8 454 51.1
Hma1.2p1_0449F.1_g155160 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 3.2e-109 399.8 515 47.4
Nn3g17142 Nelumbo nucifera HOM05D007272 ORTHO05D009305 4.1e-109 399.4 519 45.9
Duzib187G0958 Durio zibethinus HOM05D007272 ORTHO05D009305 1.2e-108 397.9 516 47.1
QL02p080768 Quercus lobata HOM05D007272 ORTHO05D009305 1.6e-108 397.5 513 47.2
TAR629G0691 Trochodendron aralioides HOM05D007272 ORTHO05D009305 6.0e-108 395.6 518 44.8
AUR62031636 Chenopodium quinoa HOM05D007272 ORTHO05D009305 7.8e-108 395.2 517 45.5
vmacro05725 Vaccinium macrocarpon HOM05D007272 ORTHO05D009305 2.3e-107 393.7 514 45.1
Cpa.g.sc14.36 Carica papaya HOM05D007272 ORTHO05D009305 3.9e-107 392.9 499 46.5
Ciclev10011541m.g Citrus clementina HOM05D007272 ORTHO05D009305 5.1e-107 392.5 518 45.2
PGR142G3376 Punica granatum HOM05D007272 ORTHO05D009305 3.3e-106 389.8 520 44.6
Thecc.04G075900 Theobroma cacao HOM05D007272 ORTHO05D009305 3.3e-106 389.8 518 45.9
DCAR_021668 Daucus carota HOM05D007272 ORTHO05D009305 1.2e-105 387.9 512 44.7
Gorai.006G025400 Gossypium raimondii HOM05D007272 ORTHO05D009305 1.6e-105 387.5 517 45.6
Gohir.A09G022200 Gossypium hirsutum HOM05D007272 ORTHO05D009305 2.8e-105 386.7 517 45.8
CiPaw.04G019400 Carya illinoinensis HOM05D007272 ORTHO05D009305 1.4e-104 384.4 519 44.5
Lj7C400T1 Lonicera japonica HOM05D007272 ORTHO05D009305 1.1e-101 374.8 518 43.2
Sc10g0003770 Simmondsia chinensis HOM05D007272 ORTHO05D009305 1.2e-100 371.3 518 44.4
Ah.10g031300 Amaranthus hybridus HOM05D007272 ORTHO05D009305 1.6e-100 370.9 519 43.4
Hund13235 Selenicereus undatus HOM05D007272 ORTHO05D009305 5.1e-99 365.9 518 42.5
HanXRQChr14g0449311 Helianthus annuus HOM05D007272 ORTHO05D009305 5.6e-98 362.5 516 44.4
EL10Ac2g02942 Beta vulgaris HOM05D007272 ORTHO05D009305 6.2e-97 359.0 509 43.6
CANSAT64G0717 Cannabis sativa HOM05D007272 ORTHO05D009305 8.1e-97 358.6 521 41.5
Phvul.004G026700 Phaseolus vulgaris HOM05D007272 ORTHO05D009305 8.1e-97 358.6 532 42.5
Gohir.D09G021400 Gossypium hirsutum HOM05D007272 ORTHO05D009305 1.8e-96 357.5 412 50.2
Ca_04270_v3 Cicer arietinum L. HOM05D007272 ORTHO05D009305 2.0e-95 354.0 522 42.5
MSTRG.3220 Avicennia marina HOM05D007272 ORTHO05D009305 2.6e-95 353.6 517 42.2
Glyma.13G064500 Glycine max HOM05D007272 ORTHO05D009305 2.6e-95 353.6 528 43.4
Lsat_1_v5_gn_2_88701 Lactuca sativa HOM05D007272 ORTHO05D009305 2.9e-94 350.1 524 41.6
Lalb_Chr21g0318941 Lupinus albus HOM05D007272 ORTHO05D009305 2.9e-94 350.1 523 42.3
RhsimUnG0056400 Rhododendron simsii HOM05D007272 ORTHO05D009305 6.4e-94 349.0 593 40.1
RhsimUnG0199700 Rhododendron simsii HOM05D007272 ORTHO05D009305 2.4e-93 347.1 592 39.4
ClCG10G014870 Citrullus lanatus HOM05D007272 ORTHO05D009305 4.2e-93 346.3 516 42.4
Lj2g0009951 Lotus japonicus HOM05D007272 ORTHO05D009305 4.2e-93 346.3 527 41.9
QL02p080779 Quercus lobata HOM05D007272 ORTHO05D009305 5.4e-93 345.9 571 40.6
Cc07_g03090 Coffea canephora HOM05D007272 ORTHO05D009305 8.7e-91 338.6 517 40.8
Lj2g0023599 Lotus japonicus HOM05D007272 ORTHO05D009305 1.9e-90 337.4 524 41.6
arahy.Tifrunner.gnm1.ann1.UFNR33 Arachis hypogaea HOM05D007272 ORTHO05D009305 7.3e-90 335.5 524 41.4
ECA238G2465 Erigeron canadensis HOM05D007272 ORTHO05D009305 9.6e-90 335.1 511 41.5
SalBow1G7111 Salvia bowleyana HOM05D007272 ORTHO05D009305 9.6e-90 335.1 519 40.7
PSO591G0492 Papaver somniferum HOM05D007272 ORTHO05D009305 6.2e-89 332.4 516 40.7
Dinv33728 Davidia involucrata HOM05D007272 ORTHO05D009305 1.1e-88 331.6 408 47.5
TPR.G4317 Trifolium pratense HOM05D007272 ORTHO05D009305 1.8e-88 330.9 518 40.9
Nitab4.5_0009739g0030 Nicotiana tabacum HOM05D007272 ORTHO05D009305 3.1e-88 330.1 524 40.1
THA.LOC104822369 Tarenaya hassleriana HOM05D007272 ORTHO05D009305 1.2e-87 328.2 517 39.7
Peaxi162Scf00129g00431 Petunia axillaris HOM05D007272 ORTHO05D009305 4.9e-86 322.8 534 40.3
SGA_v2.0_scaffold135G34775 Striga asiatica HOM05D007118 ORTHO05D008957 1.9e-85 320.9 519 39.3
Migut.H00895 Erythranthe guttata HOM05D007272 ORTHO05D009305 3.2e-85 320.1 517 40.0
MD17G1048100 Malus domestica HOM05D007272 ORTHO05D009305 1.2e-84 318.2 298 60.1
Sopen02g032460 Solanum pennellii HOM05D007272 ORTHO05D009305 7.9e-84 315.5 523 39.0
Psat1g075440 Pisum sativum HOM05D007272 ORTHO05D009305 3.9e-83 313.2 526 39.9
Solyc02g087730.3 Solanum lycopersicum HOM05D007272 ORTHO05D009305 8.7e-83 312.0 522 38.9
Atru.chr8.1898 Acer truncatum HOM05D007272 ORTHO05D009305 2.8e-81 307.0 328 53.4
PSO832G2300 Papaver somniferum HOM05D007272 ORTHO05D009305 4.8e-81 306.2 412 45.4
Oeu037173.1 Olea europaea HOM05D007272 ORTHO05D009305 1.5e-79 301.2 522 38.7
Gorai.012G056400 Gossypium raimondii HOM05D007272 ORTHO05D009305 2.0e-79 300.8 518 39.6
Gohir.D04G050866 Gossypium hirsutum HOM05D007272 ORTHO05D009305 5.8e-79 299.3 518 39.4
arahy.Tifrunner.gnm1.ann1.091QIK Arachis hypogaea HOM05D007272 ORTHO05D009305 2.5e-77 293.9 607 35.1
ATR0706G038 Amborella trichopoda HOM05D007272 ORTHO05D009305 2.7e-76 290.4 512 38.1
Gohir.A05G363800 Gossypium hirsutum HOM05D007272 ORTHO05D009305 6.0e-76 289.3 495 39.6
Aqoxy3G03290 Aquilegia oxysepala HOM05D007272 ORTHO05D009305 3.0e-75 287.0 454 39.4
VMungo0464G0783 Vigna mungo HOM05D007272 ORTHO05D009305 1.8e-72 277.7 383 47.5
HPP92_000629 Vanilla planifolia HOM05D007272 ORTHO05D009305 4.0e-72 276.6 523 34.0
Os01g0185400 Oryza sativa ssp. japonica HOM05D007272 ORTHO05D009305 6.9e-72 275.8 517 36.2
Zm00001eb121640 Zea mays HOM05D007272 ORTHO05D009305 1.1e-69 268.5 520 35.4
COL.COLO4_25162 Corchorus olitorius HOM05D007118 ORTHO05D008957 7.1e-69 265.8 514 37.0
Glyma.19G020400 Glycine max HOM05D007272 ORTHO05D009305 3.0e-67 260.4 316 50.9
Nitab4.5_0000564g0300 Nicotiana tabacum HOM05D007272 ORTHO05D009305 2.3e-59 234.2 578 32.2
Medtr6g011500 Medicago truncatula HOM05D007272 ORTHO05D009305 3.7e-57 226.9 326 44.2
Pp3c15_23310 Physcomitrium patens HOM05D007272 ORTHO05D009305 1.4e-56 224.9 528 31.2
Mapoly0135s0023 Marchantia polymorpha HOM05D007272 ORTHO05D009305 1.7e-54 218.0 516 33.9
SMO356G0594 Selaginella moellendorffii HOM05D007272 ORTHO05D009305 5.1e-51 206.5 465 32.3
PGSC0003DMG400001312 Solanum tuberosum HOM05D007272 ORTHO05D009305 7.2e-45 186.0 263 43.0
CSS0013465 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 7.0e-40 169.5 194 52.1
CSS0034889 Camellia sinensis var. sinensis HOM05D007272 ORTHO05D009305 3.6e-36 157.1 231 42.0
CDE04G0606 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 6.3e-25 119.8 172 41.3
Zm00001eb204740 Zea mays HOM05D007272 ORTHO05D009305 2.3e-22 111.3 211 40.3
AagrBONN_evm.TU.Sc2ySwM_344.2727 Anthoceros agrestis HOM05D007272 ORTHO05D009305 2.6e-18 97.8 233 26.6
Duzib147G0842 Durio zibethinus HOM05D007272 ORTHO05D009305 1.2e-15 89.0 78 57.7
HanXRQChr07g0191831 Helianthus annuus HOM05D007272 ORTHO05D009305 2.1e-12 78.2 73 52.1
CDE04G1434 Ceratophyllum demersum HOM05D007272 ORTHO05D009305 2.3e-11 74.7 182 30.2
Hma1.2p1_2982F.1_g331250 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 5.2e-11 73.6 65 56.9
MELO3C030970.2 Cucumis melo HOM05D007272 ORTHO05D009305 2.0e-10 71.6 73 47.9
VMungo0464G0246 Vigna mungo HOM05D007272 ORTHO05D009305 5.8e-10 70.1 170 29.4
Medtr8g044020 Medicago truncatula HOM05D007272 ORTHO05D009305 1.4e-08 65.5 61 59.0
Hma1.2p1_0449F.1_g155150 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.9e-08 65.1 119 35.3
Hma1.2p1_2982F.1_g331245 Hydrangea macrophylla HOM05D007272 ORTHO05D009305 1.9e-08 65.1 119 35.3
Medtr6g011510 Medicago truncatula HOM05D007272 ORTHO05D009305 1.9e-08 65.1 173 26.6
SGA_v2.0_scaffold52G19148 Striga asiatica HOM05D007272 ORTHO05D009305 5.4e-08 63.5 114 38.6
ATR0693G009 Amborella trichopoda HOM05D007272 ORTHO05D009305 9.2e-08 62.8 101 41.6


User provided reference genes

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