Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 3.4e-294 1014.2 501 100.0
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 1.5e-270 935.6 488 94.7
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.3e-253 879.4 487 88.7
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 2.7e-230 802.0 491 82.7
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 3.7e-224 781.6 489 78.3
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 4.1e-223 778.1 491 77.8
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.5e-220 768.8 493 77.3
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.2e-220 768.1 495 78.6
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.2e-217 760.0 490 77.6
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.2e-217 760.0 493 76.9
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 7.5e-217 757.3 490 76.9
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 4.1e-215 751.5 496 74.0
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 7.0e-215 750.7 490 77.6
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 1.6e-214 749.6 491 76.6
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 2.0e-214 749.2 491 78.0
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.5e-212 743.0 531 70.8
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.5e-212 743.0 491 76.0
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 2.5e-212 742.3 489 75.7
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 2.5e-212 742.3 492 75.6
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.2e-211 740.0 489 75.5
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 2.1e-211 739.2 490 76.5
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 3.6e-211 738.4 494 74.5
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 4.7e-211 738.0 491 76.0
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 6.1e-211 737.6 490 76.1
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 8.0e-211 737.3 492 76.6
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 2.3e-210 735.7 491 75.8
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.0e-210 735.3 468 78.6
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 6.8e-210 734.2 491 74.9
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 8.9e-210 733.8 501 72.9
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 2.6e-209 732.3 496 73.6
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.3e-208 729.9 492 73.6
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 1.3e-208 729.9 492 74.4
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 3.7e-208 728.4 430 80.9
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 1.4e-207 726.5 493 74.2
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.4e-207 726.5 494 74.5
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 3.2e-207 725.3 493 74.8
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.1e-207 724.9 493 73.4
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 4.1e-207 724.9 490 73.7
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 9.2e-207 723.8 490 73.5
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 9.2e-207 723.8 424 82.1
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 1.6e-206 723.0 521 70.4
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 2.7e-206 722.2 455 76.7
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 7.8e-206 720.7 493 73.0
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.0e-205 720.3 493 73.0
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 1.3e-205 719.9 499 73.9
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 1.3e-205 719.9 493 72.6
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 5.0e-205 718.0 487 73.1
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 6.6e-205 717.6 446 78.0
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 1.1e-204 716.8 532 68.0
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 1.5e-204 716.5 491 72.9
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 4.3e-204 714.9 423 80.4
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 8.0e-203 710.7 421 81.7
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 1.8e-202 709.5 494 72.1
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 1.8e-202 709.5 458 76.2
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 3.1e-202 708.8 487 72.1
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 3.1e-202 708.8 492 72.2
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 8.9e-202 707.2 423 79.7
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 2.6e-201 705.7 489 71.4
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 3.4e-201 705.3 423 79.2
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 3.4e-201 705.3 492 72.6
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 4.4e-201 704.9 431 77.5
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 2.9e-200 702.2 487 71.7
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 2.9e-200 702.2 500 71.6
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 3.7e-200 701.8 489 71.0
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.7e-200 701.8 426 79.8
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 3.7e-200 701.8 488 72.1
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 3.7e-200 701.8 458 74.7
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 6.4e-200 701.0 423 79.7
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 8.3e-200 700.7 487 71.3
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.1e-199 700.3 422 78.9
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 1.1e-199 700.3 482 73.2
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.4e-199 699.9 419 78.3
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.9e-199 699.5 489 69.5
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 7.0e-199 697.6 487 70.4
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 9.2e-199 697.2 440 75.0
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 1.6e-198 696.4 487 70.4
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 1.6e-198 696.4 487 70.4
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.6e-198 694.9 547 67.1
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.7e-197 693.0 433 78.3
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 1.9e-196 689.5 489 69.3
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 1.9e-196 689.5 489 69.3
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.9e-196 689.5 453 72.8
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 4.3e-196 688.3 491 68.4
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 9.5e-196 687.2 495 71.5
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 8.1e-195 684.1 442 75.8
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 5.2e-194 681.4 473 71.2
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 4.9e-192 674.9 401 80.5
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 1.1e-191 673.7 427 75.9
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 5.1e-189 664.8 464 70.3
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 4.0e-186 655.2 456 73.5
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.2e-185 653.7 419 74.0
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 5.8e-185 651.4 373 83.1
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.8e-184 648.7 482 67.6
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 6.6e-181 637.9 403 76.9
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 7.6e-177 624.4 491 68.2
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.4e-175 620.2 443 70.0
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.5e-174 615.5 373 78.6
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.1e-172 610.5 408 72.3
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 6.2e-171 604.7 433 66.7
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 1.7e-168 596.7 419 68.7
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.0e-165 587.4 477 63.3
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 5.1e-165 585.1 391 72.6
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 5.6e-164 581.6 338 82.2
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.6e-158 563.5 388 70.6
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.1e-158 563.1 373 74.0
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.5e-156 557.0 500 59.0
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 8.2e-155 551.2 504 55.0
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.4e-154 549.7 401 67.6
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 3.8e-152 542.3 380 71.6
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.3e-144 517.3 498 53.8
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 6.5e-144 515.0 326 78.5
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 2.5e-135 486.5 486 52.7
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 3.7e-123 446.0 255 82.4
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 5.3e-114 415.6 390 55.4
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 7.7e-113 411.8 292 68.2
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 7.7e-113 411.8 292 68.2
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 4.0e-109 399.4 349 61.0
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 5.9e-105 385.6 290 65.2
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 4.9e-99 365.9 280 63.6
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 1.1e-98 364.8 267 67.8
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 7.8e-97 358.6 261 67.4
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 1.0e-96 358.2 291 62.9
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 3.6e-86 323.2 387 46.0
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 4.9e-83 312.8 206 73.8
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 6.0e-81 305.8 241 70.1
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 2.3e-77 293.9 336 46.1
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 8.9e-69 265.4 249 55.4
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 9.3e-66 255.4 580 31.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.5e-49 200.3 462 32.3
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 3.7e-46 190.3 110 82.7
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 2.5e-39 167.5 158 58.2
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.3e-38 165.2 109 73.4
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 1.8e-32 144.8 82 82.9
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 1.2e-28 132.1 97 61.9
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.5e-20 105.1 74 68.9
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 2.2e-19 101.3 66 72.7
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 2.2e-19 101.3 58 72.4
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 2.9e-19 100.9 65 73.8
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 8.5e-19 99.4 66 71.2
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.1e-18 99.0 67 70.1
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 1.4e-18 98.6 66 72.7
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.4e-18 98.6 66 72.7
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 1.9e-18 98.2 66 69.7
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 2.5e-18 97.8 65 70.8
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 3.2e-18 97.4 66 69.7
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 4.2e-18 97.1 66 71.2
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 5.5e-18 96.7 64 71.9
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 2.1e-17 94.7 53 75.5
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 2.2e-14 84.7 63 69.8
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.4e-13 81.3 69 62.3
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 8.5e-11 72.8 87 48.3
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 6.1e-09 66.6 45 73.3
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 8.8e-08 62.8 60 53.3
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 9.7e-07 59.3 47 55.3


User provided reference genes

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