Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1948.7 982 100.0
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1878.2 982 96.4
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1765.0 981 91.1
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1695.2 987 87.2
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 0.0e+00 1666.7 991 85.6
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1595.9 989 82.5
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1588.5 982 81.0
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 0.0e+00 1585.5 983 80.7
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1579.7 1005 80.9
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 0.0e+00 1571.2 967 81.0
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1563.5 983 79.6
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 0.0e+00 1518.1 968 78.6
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1503.0 989 78.8
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1502.6 983 76.8
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1501.5 973 77.5
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 0.0e+00 1500.7 985 77.9
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1500.3 983 78.7
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 0.0e+00 1499.6 968 77.6
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 0.0e+00 1494.2 984 76.9
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 0.0e+00 1492.6 1022 75.0
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1489.6 1007 78.0
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 0.0e+00 1487.6 985 77.2
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1477.6 975 76.3
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1476.5 978 75.9
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 0.0e+00 1476.1 954 77.3
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1473.4 980 75.5
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 0.0e+00 1473.4 974 76.6
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1472.6 964 77.2
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1467.6 967 76.3
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 0.0e+00 1464.9 985 76.1
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1464.1 966 76.7
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 0.0e+00 1459.1 964 77.0
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1454.1 970 75.2
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1454.1 970 75.2
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 0.0e+00 1454.1 969 76.3
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 0.0e+00 1449.9 963 76.7
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1448.0 976 75.1
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1446.4 972 75.1
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 0.0e+00 1438.3 984 74.2
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 0.0e+00 1426.4 965 75.4
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 0.0e+00 1422.9 967 74.7
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 0.0e+00 1422.9 994 72.5
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 0.0e+00 1419.1 984 73.5
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 0.0e+00 1416.0 965 75.5
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1409.8 988 72.8
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 0.0e+00 1407.1 982 72.5
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 0.0e+00 1405.6 982 72.3
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1401.3 975 72.6
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 0.0e+00 1399.0 983 71.8
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1399.0 960 73.4
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 0.0e+00 1398.6 973 72.8
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 0.0e+00 1396.3 978 72.5
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 0.0e+00 1395.6 974 73.4
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1394.4 979 71.7
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1393.3 979 71.7
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 0.0e+00 1393.3 982 71.5
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 0.0e+00 1392.5 913 77.3
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 0.0e+00 1392.1 974 72.8
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 0.0e+00 1391.3 966 73.4
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1389.8 980 71.5
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1389.4 972 72.1
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1389.0 979 71.6
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1389.0 979 71.8
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1385.9 971 72.1
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 0.0e+00 1383.2 973 71.2
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1381.7 972 72.5
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1380.2 931 74.3
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1364.7 1024 68.6
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1364.0 972 71.5
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 0.0e+00 1363.6 972 71.4
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1359.0 972 71.5
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1349.3 1028 68.4
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 0.0e+00 1346.6 973 71.2
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 0.0e+00 1310.8 983 69.2
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 0.0e+00 1303.9 1032 64.6
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 0.0e+00 1290.4 985 66.5
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1289.6 923 71.3
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 0.0e+00 1216.8 905 70.2
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1182.2 858 69.2
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1169.1 944 65.3
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 0.0e+00 1164.8 907 65.7
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 0.0e+00 1124.8 739 74.3
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 0.0e+00 1100.1 804 70.9
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 0.0e+00 1088.6 957 58.5
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 3.3e-309 1065.1 971 56.1
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 3.2e-296 1021.9 960 56.0
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 7.1e-296 1020.8 712 71.8
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 2.0e-290 1002.7 701 69.6
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 4.5e-274 948.3 703 70.8
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 4.6e-271 938.3 959 52.9
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.1e-264 917.1 667 72.0
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 2.0e-258 896.3 689 68.4
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 2.2e-244 849.7 698 64.6
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 4.5e-242 842.0 580 70.7
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 2.3e-233 813.1 951 48.5
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 2.7e-226 789.6 772 55.3
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 2.1e-223 780.0 624 66.5
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 8.9e-214 748.0 624 61.4
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 2.0e-213 746.9 516 71.1
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.1e-208 731.1 572 67.5
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 1.1e-195 688.0 406 84.0
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 4.2e-187 659.4 386 81.9
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 2.6e-152 543.9 978 37.2
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.7e-151 541.2 327 79.2
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 3.6e-138 496.9 292 80.8
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 5.7e-136 489.6 985 34.0
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 5.9e-117 426.4 334 63.2
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.5e-115 421.8 416 56.0
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 9.2e-102 375.9 240 85.8
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 4.2e-78 297.4 212 69.8
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 1.3e-55 222.6 143 83.9
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 3.8e-55 221.1 216 57.4
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 3.8e-55 221.1 136 86.0
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 4.6e-53 214.2 108 89.8
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 1.8e-41 175.6 137 73.7
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.4e-33 148.7 106 69.8
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.3e-23 116.3 67 80.6
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 7.2e-22 110.5 67 77.6
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 7.2e-22 110.5 67 77.6
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 9.4e-22 110.2 67 77.6
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.6e-21 109.4 67 77.6
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.6e-21 109.4 67 77.6
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.6e-21 109.4 67 77.6
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 3.6e-21 108.2 67 76.1
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 6.1e-21 107.5 55 89.1
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.3e-20 105.5 67 76.1
RcHm_v2.0_Chr7g0219551 Rosa chinensis HOM05D005389 ORTHO05D008484 4.0e-20 104.8 63 87.3
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.2e-20 104.4 67 73.1
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 5.7e-19 100.9 74 68.9
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 5.7e-19 100.9 74 68.9
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.7e-18 99.4 76 67.1
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 2.8e-18 98.6 64 71.9
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 2.7e-16 92.0 74 63.5
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 5.9e-16 90.9 74 56.8
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 7.7e-16 90.5 69 65.2
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 1.3e-10 73.2 71 53.5
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 2.2e-10 72.4 71 53.5
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 2.2e-10 72.4 71 53.5
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 1.2e-08 66.6 357 26.6
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 4.5e-08 64.7 346 24.6
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 7.7e-08 63.9 53 69.8
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 1.0e-07 63.5 53 69.8
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 1.0e-07 63.5 56 62.5
Pp3c17_5950 Physcomitrium patens HOM05D005389 ORTHO05D316153 7.2e-06 57.4 56 51.8


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