Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 1.4e-159 566.2 282 100.0
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 5.4e-148 527.7 282 91.5
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 3.4e-142 508.4 282 88.7
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 8.4e-141 503.8 282 88.3
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.6e-134 482.3 282 83.3
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.6e-134 482.3 282 83.3
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 3.5e-131 471.9 279 82.1
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.3e-130 469.9 281 82.2
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 3.9e-130 468.4 280 81.8
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 5.1e-130 468.0 286 80.1
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.5e-129 465.7 282 80.9
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 2.5e-129 465.7 282 80.5
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 2.5e-129 465.7 280 81.8
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.7e-129 464.5 282 81.6
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.6e-128 463.0 282 80.1
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 4.8e-128 461.5 280 80.7
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 4.8e-128 461.5 280 80.7
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.1e-127 460.3 282 79.8
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 1.1e-127 460.3 301 77.1
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.4e-127 459.9 282 80.1
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-127 459.5 282 81.2
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 2.4e-127 459.1 282 79.8
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 3.1e-127 458.8 282 80.5
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 3.1e-127 458.8 282 80.5
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 4.0e-127 458.4 281 80.4
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.0e-127 458.4 282 79.1
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 9.0e-127 457.2 282 78.4
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 1.2e-126 456.8 282 80.5
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 1.2e-126 456.8 284 80.6
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.5e-126 456.4 283 80.2
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 2.0e-126 456.1 280 79.3
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-126 456.1 282 80.5
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 2.6e-126 455.7 282 79.8
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 2.6e-126 455.7 279 80.6
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 3.4e-126 455.3 282 78.0
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.4e-126 455.3 282 80.5
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 5.8e-126 454.5 282 80.1
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 5.8e-126 454.5 280 81.1
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 7.6e-126 454.1 283 79.9
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.3e-125 453.4 285 80.7
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 2.2e-125 452.6 282 79.1
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 3.8e-125 451.8 282 79.4
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 3.8e-125 451.8 282 78.0
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 5.0e-125 451.4 282 78.7
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.1e-124 450.3 279 79.6
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.1e-124 450.3 282 78.0
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.9e-124 449.5 279 78.5
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.5e-124 449.1 276 80.1
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 3.2e-124 448.7 287 78.4
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 3.2e-124 448.7 282 77.3
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 4.2e-124 448.4 282 77.0
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 5.5e-124 448.0 279 79.2
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 1.2e-123 446.8 282 78.4
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 2.1e-123 446.0 279 78.1
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.7e-123 445.7 284 78.9
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 2.7e-123 445.7 282 78.7
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.7e-123 445.7 279 78.5
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 3.5e-123 445.3 281 78.6
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 7.9e-123 444.1 281 79.4
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 7.9e-123 444.1 281 78.6
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.0e-122 443.7 281 79.4
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.0e-122 443.7 281 77.6
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.3e-122 443.4 282 79.1
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.8e-122 443.0 280 78.6
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 2.3e-122 442.6 279 78.5
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 3.0e-122 442.2 281 78.3
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 6.7e-122 441.0 282 78.4
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.1e-121 440.3 279 77.4
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.5e-121 439.9 285 77.9
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 1.5e-121 439.9 280 77.9
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.3e-121 438.3 279 77.4
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 7.4e-121 437.6 280 77.5
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 2.8e-120 435.6 292 75.0
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 3.7e-120 435.3 223 96.0
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 4.8e-120 434.9 285 76.1
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 6.3e-120 434.5 282 76.6
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 8.2e-120 434.1 300 72.7
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.1e-119 433.7 278 77.7
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.4e-119 433.3 282 76.2
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 3.1e-119 432.2 283 76.7
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.3e-119 431.4 262 83.2
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.5e-118 429.9 280 75.7
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.5e-118 429.9 278 75.9
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 2.6e-118 429.1 282 77.3
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 4.5e-118 428.3 284 76.8
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 5.9e-118 427.9 303 71.6
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.0e-117 427.2 238 88.2
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 2.2e-117 426.0 280 74.6
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.9e-117 425.6 269 77.7
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 3.8e-117 425.2 289 73.7
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 5.0e-117 424.9 279 75.6
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 8.5e-117 424.1 289 73.4
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 1.4e-116 423.3 279 75.3
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.5e-116 422.5 291 73.5
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.6e-115 419.9 263 76.8
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 7.9e-115 417.5 282 77.0
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.0e-114 417.2 289 72.7
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.4e-114 416.8 291 72.2
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 3.0e-114 415.6 289 70.9
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 3.3e-113 412.1 291 70.8
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 5.7e-113 411.4 291 71.5
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 7.4e-113 411.0 298 69.8
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 2.8e-112 409.1 287 71.4
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.4e-111 406.8 285 70.9
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 8.5e-109 397.5 290 69.7
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 2.1e-107 392.9 236 82.2
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 3.6e-107 392.1 281 70.5
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 3.3e-105 385.6 292 67.1
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-101 373.2 276 69.2
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.2e-101 372.9 269 71.7
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 1.5e-100 370.2 292 66.4
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 2.3e-98 362.8 280 66.4
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 8.8e-98 360.9 278 67.6
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.2e-96 356.3 258 71.7
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 4.0e-90 335.5 291 61.2
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 4.0e-90 335.5 302 60.3
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 1.5e-89 333.6 201 79.6
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 9.8e-89 330.9 286 61.9
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.3e-88 330.5 286 61.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.7e-88 330.1 319 53.6
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 8.3e-88 327.8 199 76.9
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 3.4e-81 305.8 211 72.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.1e-76 290.8 218 64.7
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 3.0e-74 282.7 161 85.1
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 2.0e-73 280.0 192 74.5
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 2.9e-72 276.2 156 85.3
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 1.1e-71 274.2 298 52.7
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 3.3e-68 262.7 253 54.9
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 3.1e-66 256.1 297 48.1
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 4.9e-64 248.8 171 76.0
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.3e-61 240.7 135 85.2
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 3.0e-61 239.6 330 42.4
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.3e-60 235.7 171 68.4
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 6.2e-59 231.9 165 69.1
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 3.0e-53 213.0 120 85.0
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-51 207.2 157 69.4
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 2.0e-49 200.3 273 42.1
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-48 197.6 112 84.8
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-48 197.2 112 84.8
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 8.6e-45 184.9 241 46.9
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.4e-40 168.3 136 66.9
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.2e-39 166.4 93 86.0
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 5.1e-37 159.1 101 77.2
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.7e-37 158.3 269 42.8
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-36 157.9 94 80.9
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-36 157.1 91 81.3
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.5e-36 156.8 91 81.3
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.5e-36 156.8 91 81.3
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.6e-36 155.6 94 79.8
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.3e-36 155.2 91 81.3
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.6e-36 154.8 91 80.2
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.2e-35 152.1 91 79.1
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-34 151.4 88 83.0
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-34 150.6 91 80.2
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-28 131.3 94 71.3
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 1.6e-27 127.5 75 78.7
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 3.1e-26 123.2 75 77.3
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 2.6e-25 120.2 95 63.2
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 2.6e-25 120.2 95 63.2
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.6e-25 120.2 107 62.6
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-21 107.5 94 60.6
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.9e-21 106.3 64 79.7
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.9e-21 106.3 94 60.6
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.7e-21 105.5 62 77.4
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.7e-21 105.1 64 79.7
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-20 104.8 94 60.6
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.6e-20 102.4 74 74.3
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 5.6e-20 102.4 75 66.7
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.6e-19 100.9 81 63.0
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 5.8e-17 92.4 50 84.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 5.8e-17 92.4 50 84.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-16 90.9 50 82.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.7e-16 90.9 50 82.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.8e-16 89.7 47 83.0
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 2.2e-08 63.9 67 58.2
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 6.5e-08 62.4 153 31.4
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 5.5e-07 59.3 91 39.6


User provided reference genes

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