Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 3.4e-133 478.4 252 100.0
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 6.6e-113 411.0 253 86.2
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.9e-100 369.0 252 77.8
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.9e-90 334.3 254 72.8
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.2e-85 320.5 254 70.1
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 3.4e-85 318.9 253 70.0
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.6e-85 317.8 255 70.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.3e-84 317.0 254 66.9
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 4.9e-84 315.1 256 67.6
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.4e-84 314.3 255 69.4
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 8.4e-84 314.3 253 63.2
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.1e-83 313.9 255 67.8
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.4e-83 313.5 273 63.4
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.2e-82 310.5 255 68.2
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.2e-82 310.5 245 70.2
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.6e-82 310.1 256 66.4
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.6e-82 310.1 256 64.8
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 2.1e-82 309.7 255 65.5
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.3e-81 307.0 255 64.7
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.9e-81 305.4 243 66.7
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 8.7e-81 304.3 243 67.5
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.9e-80 303.1 242 66.9
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.3e-80 302.0 258 65.5
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 7.4e-80 301.2 242 66.9
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 9.7e-80 300.8 242 64.5
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 1.3e-79 300.4 254 63.8
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.2e-79 299.7 257 63.4
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.8e-79 298.5 242 64.0
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 6.3e-79 298.1 254 64.2
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 6.3e-79 298.1 243 63.8
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 1.1e-78 297.4 243 63.8
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.4e-78 297.0 245 65.3
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 5.3e-78 295.0 227 71.4
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.9e-78 294.7 257 63.0
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.0e-77 293.1 286 58.0
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.0e-77 293.1 256 64.8
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.4e-77 292.4 243 63.8
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 5.9e-77 291.6 253 60.9
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 1.3e-76 290.4 244 62.7
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.2e-76 289.7 253 63.2
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 3.8e-76 288.9 256 62.9
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 5.0e-76 288.5 254 60.6
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.1e-75 287.3 248 62.5
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.4e-75 287.0 242 61.6
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.9e-75 286.6 244 61.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 4.2e-75 285.4 241 64.7
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 4.2e-75 285.4 242 62.0
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.2e-74 283.9 256 61.7
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.2e-74 283.9 253 62.1
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.2e-74 283.9 223 68.2
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.6e-74 283.5 232 64.2
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.6e-74 283.5 232 64.7
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 2.1e-74 283.1 246 62.6
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.6e-74 282.3 248 61.7
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 6.1e-74 281.6 241 61.4
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 6.1e-74 281.6 234 67.1
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 7.9e-74 281.2 242 61.2
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 1.4e-73 280.4 280 56.8
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 1.8e-73 280.0 245 59.2
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 3.9e-73 278.9 253 60.1
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 5.1e-73 278.5 234 63.7
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.1e-72 277.3 236 61.0
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.1e-72 277.3 260 60.8
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 2.0e-72 276.6 249 60.2
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 2.5e-72 276.2 253 59.3
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.5e-72 276.2 253 58.1
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.3e-72 275.8 225 65.3
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.3e-72 275.8 253 62.1
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 4.3e-72 275.4 244 63.1
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 1.3e-71 273.9 255 59.6
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 4.8e-71 271.9 255 59.2
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.3e-71 271.6 253 58.1
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.1e-70 270.8 255 59.2
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.4e-70 270.4 254 59.8
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 1.4e-70 270.4 244 61.9
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 4.1e-70 268.9 227 62.1
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 5.3e-70 268.5 247 61.1
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.5e-69 266.9 254 58.3
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.0e-69 266.5 234 62.4
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 5.9e-69 265.0 243 62.1
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.3e-68 263.8 252 57.1
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 2.2e-68 263.1 255 58.8
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 2.9e-68 262.7 239 59.4
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.4e-67 260.4 242 58.7
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.9e-67 260.0 242 58.3
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 3.2e-67 259.2 221 64.3
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 4.2e-67 258.8 228 58.8
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 4.2e-67 258.8 233 61.8
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 4.2e-67 258.8 227 63.0
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 4.2e-67 258.8 276 54.0
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 5.5e-67 258.5 269 53.5
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 9.4e-67 257.7 204 65.7
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 1.6e-66 256.9 248 60.9
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.7e-66 256.1 243 60.5
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 2.7e-66 256.1 245 57.1
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 6.1e-66 255.0 232 61.2
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 3.0e-65 252.7 235 60.9
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 1.5e-64 250.4 255 56.1
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.5e-64 250.4 226 59.3
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 2.0e-64 250.0 257 56.0
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 2.6e-64 249.6 230 61.7
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 4.4e-64 248.8 245 57.6
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.3e-63 247.3 260 54.2
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.3e-63 247.3 260 54.2
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 2.2e-63 246.5 253 54.5
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 3.7e-63 245.7 252 55.2
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 6.3e-63 245.0 188 69.1
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 6.3e-63 245.0 245 58.0
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 8.2e-63 244.6 249 55.4
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 4.1e-62 242.3 273 51.3
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 7.0e-62 241.5 192 68.2
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 9.1e-62 241.1 259 53.7
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 9.1e-62 241.1 259 53.7
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.0e-61 240.0 273 50.9
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 8.5e-60 234.6 164 73.8
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 7.2e-59 231.5 235 54.0
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.6e-58 230.3 253 54.9
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 2.6e-56 223.0 230 53.9
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.3e-55 220.7 226 57.1
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 3.7e-55 219.2 196 59.7
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 8.2e-55 218.0 170 65.9
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 2.2e-52 209.9 188 61.2
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 4.7e-50 202.2 233 51.5
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 4.8e-47 192.2 146 66.4
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 8.3e-47 191.4 232 47.8
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 8.3e-47 191.4 235 49.4
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 5.3e-46 188.7 247 51.8
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.0e-44 184.5 170 58.2
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.7e-44 183.7 237 45.1
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 1.9e-43 180.3 169 58.0
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 2.6e-40 169.9 123 67.5
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 9.1e-38 161.4 124 62.9
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.6e-34 149.4 204 48.0
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 4.7e-34 149.1 225 41.3
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.0e-33 146.4 114 71.9
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 4.0e-33 146.0 214 43.0
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 5.7e-32 142.1 236 38.1
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 5.9e-29 132.1 149 51.0
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 8.6e-28 128.3 79 73.4
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.9e-27 127.1 120 57.5
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.3e-27 126.3 120 57.5
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 9.5e-27 124.8 119 57.1
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.8e-26 123.2 116 55.2
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 4.4e-24 115.9 117 53.8
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 4.4e-24 115.9 117 53.8
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 4.4e-24 115.9 117 53.8
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 3.2e-22 109.8 171 45.6
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 8.9e-17 91.7 117 53.0
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 9.8e-16 88.2 101 50.5
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 5.4e-14 82.4 101 52.5
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 5.1e-12 75.9 252 29.0
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 6.6e-12 75.5 194 33.5
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 5.2e-09 65.9 47 66.0
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 2.0e-08 63.9 57 61.4
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.3e-07 61.2 218 26.6
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.3e-07 61.2 143 32.2
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.3e-07 61.2 74 50.0
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 2.9e-07 60.1 228 28.1
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 4.9e-07 59.3 191 28.8
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 4.9e-07 59.3 208 28.8
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 1.4e-06 57.8 131 32.1
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.9e-06 57.4 145 28.3
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 1.9e-06 57.4 189 28.6
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 2.4e-06 57.0 142 28.9
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 3.2e-06 56.6 156 30.1
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 4.1e-06 56.2 169 26.0
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 4.1e-06 56.2 142 31.7
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 5.4e-06 55.8 139 31.7
PSO782G2536 Papaver somniferum HOM05D004631 ORTHO05D005223 5.4e-06 55.8 64 48.4
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.1e-06 55.5 143 32.2
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 7.1e-06 55.5 141 30.5
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 7.1e-06 55.5 113 33.6
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 9.2e-06 55.1 122 32.0
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 9.2e-06 55.1 122 32.0
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 9.2e-06 55.1 117 31.6
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 9.2e-06 55.1 117 31.6
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 9.2e-06 55.1 140 32.9
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 9.2e-06 55.1 185 26.5
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 9.2e-06 55.1 143 32.2
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 9.2e-06 55.1 140 32.9
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 9.2e-06 55.1 140 32.9


User provided reference genes

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