Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1013900 Malus domestica HOM05D001599 ORTHO05D005517 1.3e-70 269.6 136 100.0
MD17G1014400 Malus domestica HOM05D001599 ORTHO05D005517 4.0e-48 194.9 224 54.0
Prupe.3G303400 Prunus persica HOM05D001599 ORTHO05D005517 2.4e-45 185.7 226 50.4
RcHm_v2.0_Chr2g0175001 Rosa chinensis HOM05D001599 ORTHO05D005517 4.9e-38 161.4 222 45.9
FvH4_6g53130 Fragaria vesca HOM05D001599 ORTHO05D005517 3.5e-36 155.2 222 44.6
FAN05G1313 Fragaria x ananassa HOM05D001599 ORTHO05D005517 3.5e-36 155.2 222 44.6
FAN09G2664 Fragaria x ananassa HOM05D001599 ORTHO05D005517 3.5e-36 155.2 222 44.6
FAN14G0076 Fragaria x ananassa HOM05D001599 ORTHO05D005517 3.5e-36 155.2 222 44.6
CSS0038544 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 9.6e-34 147.1 200 47.0
Haze_14845 Corylus avellana HOM05D001599 ORTHO05D005517 1.6e-33 146.4 235 40.9
CANSAT64G1266 Cannabis sativa HOM05D001599 ORTHO05D005517 3.7e-33 145.2 232 41.4
QL02p071905 Quercus lobata HOM05D001599 ORTHO05D005517 1.4e-32 143.3 231 41.1
TAR374G0283 Trochodendron aralioides HOM05D001599 ORTHO05D005517 1.8e-32 142.9 226 41.6
TAR622G1171 Trochodendron aralioides HOM05D001599 ORTHO05D005517 3.1e-32 142.1 233 40.8
CSS0011435 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 6.9e-32 141.0 216 43.5
Cfa007247 Carpinus fangiana HOM05D001599 ORTHO05D005517 6.9e-32 141.0 236 40.3
CiPaw.03G053300 Carya illinoinensis HOM05D001599 ORTHO05D005517 1.2e-31 140.2 234 39.3
CSS0021261 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 1.5e-31 139.8 215 42.8
PGR083G1002 Punica granatum HOM05D001599 ORTHO05D005517 1.5e-31 139.8 215 43.3
Ciclev10016237m.g Citrus clementina HOM05D001599 ORTHO05D005517 2.6e-31 139.0 222 42.8
Atru.chr6.2525 Acer truncatum HOM05D001599 ORTHO05D005517 4.5e-31 138.3 215 43.7
Manes.17G104800 Manihot esculenta HOM05D001599 ORTHO05D005517 4.5e-31 138.3 203 43.8
GSVIVG01001813001 Vitis vinifera HOM05D001599 ORTHO05D005517 4.5e-31 138.3 233 41.2
Gohir.A07G226800 Gossypium hirsutum HOM05D001599 ORTHO05D005517 1.7e-30 136.3 207 43.0
Hma1.2p1_0279F.1_g112590 Hydrangea macrophylla HOM05D001599 ORTHO05D005517 2.2e-30 136.0 233 39.9
Eucgr.J02317 Eucalyptus grandis HOM05D001599 ORTHO05D005517 3.8e-30 135.2 232 40.9
Eucgr.L02910 Eucalyptus grandis HOM05D001599 ORTHO05D005517 3.8e-30 135.2 232 40.9
Sed0016418 Sechium edule HOM05D001599 ORTHO05D005517 3.8e-30 135.2 234 38.9
Gohir.D07G234000 Gossypium hirsutum HOM05D001599 ORTHO05D005517 4.9e-30 134.8 207 41.5
Gorai.001G269400 Gossypium raimondii HOM05D001599 ORTHO05D005517 8.4e-30 134.0 207 42.5
Cpa.g.c33526 Carica papaya HOM05D001599 ORTHO05D005517 1.4e-29 133.3 222 40.5
Rhsim10G0008200 Rhododendron simsii HOM05D001599 ORTHO05D005517 1.9e-29 132.9 223 40.4
Lj1g0000504 Lotus japonicus HOM05D001599 ORTHO05D005517 9.3e-29 130.6 219 40.2
arahy.Tifrunner.gnm1.ann1.THM6KE Arachis hypogaea HOM05D001599 ORTHO05D005517 1.6e-28 129.8 220 40.0
Thecc.04G031100 Theobroma cacao HOM05D001599 ORTHO05D005517 2.1e-28 129.4 202 41.1
TPR.G38326 Trifolium pratense HOM05D001599 ORTHO05D005517 2.1e-28 129.4 220 38.6
vmacro05942 Vaccinium macrocarpon HOM05D001599 ORTHO05D005517 2.1e-28 129.4 224 40.2
ClCG05G013350 Citrullus lanatus HOM05D001599 ORTHO05D005517 2.7e-28 129.0 239 37.7
Nn4g22379 Nelumbo nucifera HOM05D001599 ORTHO05D005517 2.7e-28 129.0 230 38.3
Psat3g176120 Pisum sativum HOM05D001599 ORTHO05D005517 2.7e-28 129.0 220 40.0
Ca_18152_v3 Cicer arietinum L. HOM05D001599 ORTHO05D005517 7.9e-28 127.5 222 38.7
Actinidia05908 Actinidia chinensis HOM05D001599 ORTHO05D005517 1.0e-27 127.1 232 39.2
Duzib147G1152 Durio zibethinus HOM05D001599 ORTHO05D005517 1.0e-27 127.1 208 40.4
Lalb_Chr14g0363201 Lupinus albus HOM05D001599 ORTHO05D005517 1.0e-27 127.1 220 39.1
Glyma.16G059400 Glycine max HOM05D001599 ORTHO05D005517 1.8e-27 126.3 219 37.9
Sabra15G0114800 Salix brachista HOM05D001599 ORTHO05D005517 1.8e-27 126.3 196 42.3
GSVIVG01008511001 Vitis vinifera HOM05D001599 ORTHO05D005517 1.8e-27 126.3 209 40.2
Manes.15G158900 Manihot esculenta HOM05D001599 ORTHO05D005517 3.0e-27 125.6 203 41.9
COL.COLO4_08740 Corchorus olitorius HOM05D001599 ORTHO05D005517 3.9e-27 125.2 207 40.1
FAN02G0281 Fragaria x ananassa HOM05D001599 ORTHO05D005517 3.9e-27 125.2 199 42.2
TWI12G0332 Tripterygium wilfordii HOM05D001599 ORTHO05D005517 3.9e-27 125.2 207 42.5
Potri.001G333100 Populus trichocarpa HOM05D001599 ORTHO05D005517 5.1e-27 124.8 207 41.1
Hund13054 Selenicereus undatus HOM05D001599 ORTHO05D005517 5.1e-27 124.8 217 40.1
Potri.015G093200 Populus trichocarpa HOM05D001599 ORTHO05D005517 1.1e-26 123.6 188 43.1
Gohir.A05G339900 Gossypium hirsutum HOM05D001599 ORTHO05D005517 1.5e-26 123.2 207 41.1
HanXRQChr09g0256091 Helianthus annuus HOM05D001599 ORTHO05D005517 1.5e-26 123.2 197 39.6
MBI08_g17169_MAGBIO Magnolia biondii HOM05D001599 ORTHO05D005517 1.9e-26 122.9 233 38.6
MELO3C014867.2 Cucumis melo HOM05D001599 ORTHO05D005517 3.3e-26 122.1 237 37.1
ECA232G4051 Erigeron canadensis HOM05D001599 ORTHO05D005517 3.3e-26 122.1 201 39.3
Sabra16G0214300 Salix brachista HOM05D001599 ORTHO05D005517 3.3e-26 122.1 207 40.6
Aqoxy3G01488 Aquilegia oxysepala HOM05D001599 ORTHO05D005517 4.3e-26 121.7 235 39.1
Gohir.D04G078400 Gossypium hirsutum HOM05D001599 ORTHO05D005517 4.3e-26 121.7 209 40.7
Gorai.012G088300 Gossypium raimondii HOM05D001599 ORTHO05D005517 4.3e-26 121.7 209 41.1
Cc07_g00650 Coffea canephora HOM05D001599 ORTHO05D005517 9.7e-26 120.6 235 34.9
CsaV3_3G027210 Cucumis sativus L. HOM05D001599 ORTHO05D005517 9.7e-26 120.6 237 37.1
CAN.G1965.16 Capsicum annuum HOM05D001599 ORTHO05D005517 1.3e-25 120.2 230 38.3
SalBow1G1605 Salvia bowleyana HOM05D001599 ORTHO05D005517 2.2e-25 119.4 220 38.6
SalBow1G3064 Salvia bowleyana HOM05D001599 ORTHO05D005517 2.2e-25 119.4 220 38.6
Sc03g0006650 Simmondsia chinensis HOM05D001599 ORTHO05D005517 3.7e-25 118.6 197 40.6
Manes.14G053000 Manihot esculenta HOM05D001599 ORTHO05D005517 4.8e-25 118.2 198 40.9
PGSC0003DMG400013379 Solanum tuberosum HOM05D001599 ORTHO05D005517 4.8e-25 118.2 230 37.0
Cfa018845 Carpinus fangiana HOM05D001599 ORTHO05D005517 6.3e-25 117.9 187 41.7
Glyma.19G088000 Glycine max HOM05D001599 ORTHO05D005517 6.3e-25 117.9 218 36.7
Oeu013950.1 Olea europaea HOM05D001599 ORTHO05D005517 8.2e-25 117.5 230 37.0
Phvul.001G095650 Phaseolus vulgaris HOM05D001599 ORTHO05D005517 1.1e-24 117.1 220 36.4
Solyc03g005050.3 Solanum lycopersicum HOM05D001599 ORTHO05D005517 1.1e-24 117.1 230 37.4
Sopen03g001060 Solanum pennellii HOM05D001599 ORTHO05D000001 1.1e-24 117.1 230 37.4
arahy.Tifrunner.gnm1.ann1.G7F7H8 Arachis hypogaea HOM05D001599 ORTHO05D005517 1.4e-24 116.7 251 34.7
Nitab4.5_0000559g0240 Nicotiana tabacum HOM05D001599 ORTHO05D005517 1.4e-24 116.7 225 37.3
Dinv04867 Davidia involucrata HOM05D001599 ORTHO05D005517 2.4e-24 115.9 236 36.0
MD06G1144200 Malus domestica HOM05D001599 ORTHO05D005517 3.1e-24 115.5 182 41.2
VMungo1383G2239 Vigna mungo HOM05D001599 ORTHO05D005517 3.1e-24 115.5 220 35.9
Nitab4.5_0006819g0010 Nicotiana tabacum HOM05D001599 ORTHO05D005517 4.1e-24 115.2 225 36.0
CiPaw.12G040700 Carya illinoinensis HOM05D001599 ORTHO05D005517 6.9e-24 114.4 198 39.4
PSO017G0442 Papaver somniferum HOM05D001599 ORTHO05D005517 2.6e-23 112.5 234 35.0
PSO478G1423 Papaver somniferum HOM05D001599 ORTHO05D005517 2.6e-23 112.5 226 35.8
AL3G10310 Arabidopsis lyrata HOM05D001599 ORTHO05D005517 3.4e-23 112.1 218 38.5
Migut.H00008 Erythranthe guttata HOM05D001599 ORTHO05D005517 3.4e-23 112.1 238 35.7
Ciclev10021683m.g Citrus clementina HOM05D001599 ORTHO05D005517 1.0e-22 110.5 188 41.0
Oeu035214.1 Olea europaea HOM05D001599 ORTHO05D005517 1.0e-22 110.5 229 35.8
Actinidia36184 Actinidia chinensis HOM05D001599 ORTHO05D005517 1.7e-22 109.8 218 37.6
Lsat_1_v5_gn_4_185320 Lactuca sativa HOM05D001599 ORTHO05D005517 2.2e-22 109.4 210 36.2
EL10Ac2g03203 Beta vulgaris HOM05D001599 ORTHO05D005517 2.9e-22 109.0 211 36.0
Cpa.g.sc13.145 Carica papaya HOM05D001599 ORTHO05D005517 2.9e-22 109.0 194 36.6
Carub.0003s0024 Capsella rubella HOM05D001599 ORTHO05D005517 5.0e-22 108.2 223 36.8
CARHR075110 Cardamine hirsuta HOM05D001599 ORTHO05D005517 5.0e-22 108.2 218 38.1
CSS0029900 Camellia sinensis var. sinensis HOM05D001599 ORTHO05D005517 8.5e-22 107.5 228 34.6
Lju41C51T12 Lonicera japonica HOM05D001599 ORTHO05D005517 8.5e-22 107.5 214 36.9
QL05p062231 Quercus lobata HOM05D001599 ORTHO05D005517 8.5e-22 107.5 194 36.1
AT3G01820 Arabidopsis thaliana HOM05D001599 ORTHO05D005517 1.1e-21 107.1 212 38.7
TWI39G0440 Tripterygium wilfordii HOM05D001599 ORTHO05D005517 1.9e-21 106.3 190 38.4
Rhsim12G0173600 Rhododendron simsii HOM05D001599 ORTHO05D005517 2.5e-21 105.9 249 33.3
Hund02426 Selenicereus undatus HOM05D001599 ORTHO05D005517 2.5e-21 105.9 216 33.8
QL10p004214 Quercus lobata HOM05D001599 ORTHO05D005517 5.5e-21 104.8 194 35.6
MD09G1014300 Malus domestica HOM05D001599 ORTHO05D005517 9.4e-21 104.0 58 86.2
Peaxi162Scf00700g00142 Petunia axillaris HOM05D001599 ORTHO05D005517 9.4e-21 104.0 214 36.4
Aa31LG5G10960 Aethionema arabicum HOM05D001599 ORTHO05D005517 2.1e-20 102.8 218 36.2
Peaxi162Scf00420g00444 Petunia axillaris HOM05D001599 ORTHO05D005517 3.6e-20 102.1 225 34.2
MSTRG.24085 Avicennia marina HOM05D001599 ORTHO05D005517 4.6e-20 101.7 239 33.9
C03p39370 Brassica napus HOM05D001599 ORTHO05D005517 4.6e-20 101.7 209 35.4
RcHm_v2.0_Chr7g0190491 Rosa chinensis HOM05D001599 ORTHO05D005517 4.6e-20 101.7 180 35.0
MSTRG.3089 Avicennia marina HOM05D001599 ORTHO05D005517 6.1e-20 101.3 238 33.6
Ah.10g032570 Amaranthus hybridus HOM05D001599 ORTHO05D005517 7.9e-20 100.9 216 34.7
A03p32320 Brassica napus HOM05D001599 ORTHO05D005517 7.9e-20 100.9 209 35.9
Ah.11g044850 Amaranthus hybridus HOM05D001599 ORTHO05D005517 1.0e-19 100.5 205 35.1
Oeu013647.1 Olea europaea HOM05D001599 ORTHO05D005517 1.4e-19 100.1 226 32.7
SGA_v2.0_scaffold18G08213 Striga asiatica HOM05D001599 ORTHO05D005517 1.8e-19 99.8 219 33.3
QL05p062226 Quercus lobata HOM05D001599 ORTHO05D005517 2.3e-19 99.4 196 34.2
BolC3t16206H Brassica oleracea HOM05D001599 ORTHO05D005517 3.0e-19 99.0 209 34.9
Thecc.03G126400 Theobroma cacao HOM05D001599 ORTHO05D005517 3.0e-19 99.0 198 36.9
Gohir.D07G056500 Gossypium hirsutum HOM05D001599 ORTHO05D005517 6.7e-19 97.8 195 36.9
SHI43493 Sapria himalayana HOM05D001599 ORTHO05D005517 8.8e-19 97.4 167 38.9
BraA03t12402Z Brassica rapa HOM05D001599 ORTHO05D005517 1.1e-18 97.1 209 34.9
Duzib205G0652 Durio zibethinus HOM05D001599 ORTHO05D005517 1.1e-18 97.1 197 35.0
Thhalv10021323m.g Eutrema salsugineum HOM05D001599 ORTHO05D005517 1.1e-18 97.1 218 35.8
QL10p004219 Quercus lobata HOM05D001599 ORTHO05D005517 1.1e-18 97.1 196 33.2
Sp3g00240 Schrenkiella parvula HOM05D001599 ORTHO05D005517 1.5e-18 96.7 218 35.3
Haze_07238 Corylus avellana HOM05D001599 ORTHO05D005517 2.5e-18 95.9 254 31.9
Gorai.001G060000 Gossypium raimondii HOM05D001599 ORTHO05D005517 2.5e-18 95.9 194 36.6
Sed0017280 Sechium edule HOM05D001599 ORTHO05D005517 2.5e-18 95.9 65 67.7
CAN.G473.84 Capsicum annuum HOM05D001599 ORTHO05D005517 9.7e-18 94.0 212 33.0
Lj9A477T58 Lonicera japonica HOM05D001599 ORTHO05D005517 1.3e-17 93.6 199 34.2
THA.LOC104802376 Tarenaya hassleriana HOM05D001599 ORTHO05D005517 1.7e-17 93.2 198 35.4
Nitab4.5_0002887g0050 Nicotiana tabacum HOM05D001599 ORTHO05D005517 2.4e-16 89.4 200 36.0
TAR629G2233 Trochodendron aralioides HOM05D001599 ORTHO05D005517 2.4e-16 89.4 83 60.2
Sopen02g038640 Solanum pennellii HOM05D001599 ORTHO05D005517 5.3e-16 88.2 210 32.4
Os08g0118900 Oryza sativa ssp. japonica HOM05D001599 ORTHO05D005517 6.9e-16 87.8 229 30.6
HPP92_005417 Vanilla planifolia HOM05D001599 ORTHO05D005517 6.9e-16 87.8 237 30.4
COL.COLO4_28079 Corchorus olitorius HOM05D001599 ORTHO05D005517 9.1e-16 87.4 208 32.2
unitig_0.g1945 Utricularia gibba HOM05D001599 ORTHO05D005517 2.0e-15 86.3 231 29.9
Solyc02g093990.4 Solanum lycopersicum HOM05D001599 ORTHO05D005517 4.5e-15 85.1 211 31.3
Actinidia08862 Actinidia chinensis HOM05D001386 ORTHO05D004014 6.5e-14 81.3 47 80.9
DCAR_015087 Daucus carota HOM05D001599 ORTHO05D005517 8.5e-14 80.9 74 56.8
vmacro16669 Vaccinium macrocarpon HOM05D001599 ORTHO05D005517 8.5e-14 80.9 61 65.6
CDE02G4001 Ceratophyllum demersum HOM05D001599 ORTHO05D005517 1.1e-13 80.5 53 71.7
Duzib187G0722 Durio zibethinus HOM05D001599 ORTHO05D005517 2.5e-13 79.3 97 49.5
AUR62029638 Chenopodium quinoa HOM05D001599 ORTHO05D005517 5.5e-13 78.2 77 55.8
vmacro16668 Vaccinium macrocarpon HOM05D001599 ORTHO05D005517 1.2e-12 77.0 68 58.8
ATR0686G171 Amborella trichopoda HOM05D001599 ORTHO05D005517 2.7e-12 75.9 235 30.6
CAN.G20.27 Capsicum annuum HOM05D002344 ORTHO05D028484 6.1e-12 74.7 59 64.4
Potri.012G095700 Populus trichocarpa HOM05D001599 ORTHO05D005517 1.0e-11 73.9 110 41.8
AUR62025918 Chenopodium quinoa HOM05D001599 ORTHO05D005517 3.0e-11 72.4 47 72.3
Gohir.A07G052000 Gossypium hirsutum HOM05D001599 ORTHO05D005517 1.5e-10 70.1 98 45.9
PGSC0003DMG400020217 Solanum tuberosum HOM05D001599 ORTHO05D028484 9.7e-10 67.4 60 56.7
SEGI_12729 Sequoiadendron giganteum HOM05D001599 ORTHO05D003184 8.2e-09 64.3 58 53.4
Zm00001eb261190 Zea mays HOM05D001599 ORTHO05D005517 1.4e-08 63.5 90 45.6
CAN.G1616.5 Capsicum annuum HOM05D002344 ORTHO05D028484 2.4e-08 62.8 68 51.5
Dinv33355 Davidia involucrata HOM05D001599 ORTHO05D005517 5.9e-07 58.2 78 48.7
Mapoly0010s0027 Marchantia polymorpha HOM05D001599 ORTHO05D003184 6.5e-06 54.7 57 49.1


User provided reference genes

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