Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 4.2e-303 1043.9 522 100.0
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 8.0e-262 906.7 523 87.4
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 1.1e-247 859.8 526 82.1
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 3.4e-244 848.2 523 81.1
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 3.1e-242 841.6 522 80.5
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 3.0e-232 808.5 528 77.7
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 3.4e-228 795.0 518 76.8
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 5.8e-228 794.3 528 76.7
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 4.9e-227 791.2 525 75.4
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 6.4e-227 790.8 510 77.5
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 1.9e-226 789.3 518 75.9
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.2e-225 786.6 524 75.4
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 7.8e-225 783.9 520 75.4
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 1.3e-224 783.1 517 74.7
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 2.5e-223 778.9 524 75.2
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.1e-222 775.8 537 74.5
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 6.2e-222 774.2 511 76.5
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 1.5e-220 769.6 512 73.8
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 2.0e-220 769.2 503 75.0
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 3.4e-220 768.5 504 75.2
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 4.4e-220 768.1 526 74.0
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 7.5e-220 767.3 495 75.8
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 1.3e-219 766.5 508 74.2
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 2.2e-219 765.8 524 74.6
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 3.2e-218 761.9 525 73.1
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 7.1e-218 760.8 524 74.0
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 1.6e-217 759.6 532 72.4
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 6.0e-217 757.7 513 73.9
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 1.7e-216 756.1 522 71.5
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 2.3e-216 755.7 505 73.9
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 2.5e-215 752.3 515 72.6
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 2.5e-215 752.3 509 73.5
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 3.3e-215 751.9 514 73.7
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 4.3e-215 751.5 514 73.5
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 4.3e-215 751.5 522 72.6
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.2e-214 750.0 523 74.2
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 3.6e-214 748.4 508 73.8
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.1e-213 745.3 437 80.1
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 3.1e-213 745.3 505 72.7
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 5.2e-213 744.6 465 76.3
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 2.0e-212 742.7 525 71.8
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 2.9e-211 738.8 504 70.4
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 2.9e-211 738.8 532 71.6
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 2.9e-211 738.8 509 71.5
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 2.9e-211 738.8 520 70.0
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 3.8e-211 738.4 520 70.0
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 5.4e-210 734.6 516 70.9
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 7.1e-210 734.2 504 70.4
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 7.8e-209 730.7 523 72.5
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.0e-208 730.3 504 70.4
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.3e-208 729.9 544 68.4
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 2.3e-208 729.2 504 70.4
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 5.6e-207 724.5 509 69.7
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 7.3e-207 724.2 513 69.2
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 7.3e-207 724.2 509 69.5
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 7.3e-207 724.2 465 74.4
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 4.7e-206 721.5 511 68.5
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 6.2e-206 721.1 505 70.3
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.8e-205 719.5 493 71.2
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 5.2e-205 718.0 484 72.3
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 6.9e-205 717.6 466 72.7
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 9.0e-205 717.2 506 70.0
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 9.0e-205 717.2 463 73.4
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 1.2e-204 716.8 520 69.4
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 7.6e-204 714.1 497 69.6
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 2.9e-203 712.2 533 66.6
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 2.9e-203 712.2 495 70.1
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 3.8e-203 711.8 450 75.3
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 1.6e-201 706.4 503 69.4
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.1e-201 706.1 493 69.8
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 1.6e-198 696.4 520 66.2
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 3.6e-198 695.3 519 68.2
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 6.2e-198 694.5 505 68.7
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 6.2e-198 694.5 513 68.8
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 3.2e-194 682.2 504 66.7
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 4.2e-194 681.8 476 68.3
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 2.4e-189 666.0 512 66.4
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 5.3e-189 664.8 452 71.2
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.7e-187 659.8 414 76.6
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 6.4e-187 657.9 418 76.8
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.3e-183 645.6 464 68.3
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 1.6e-182 643.3 479 65.3
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 1.4e-181 640.2 423 72.8
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.3e-179 633.6 515 64.7
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.9e-175 619.8 539 56.0
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 4.1e-173 612.1 526 58.6
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.5e-172 610.1 480 64.2
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 2.9e-163 579.3 526 62.2
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 6.7e-160 568.2 370 78.6
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 1.8e-152 543.5 464 56.2
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 6.7e-152 541.6 460 55.4
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 1.3e-147 527.3 339 75.2
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 1.8e-144 516.9 315 78.7
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 7.5e-143 511.5 323 79.3
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 1.3e-142 510.8 444 53.2
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 8.8e-136 488.0 340 72.9
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.0e-127 460.3 406 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 3.4e-119 433.0 401 51.4
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.4e-117 427.6 278 77.0
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 2.8e-113 413.3 383 50.4
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 1.4e-112 411.0 309 61.8
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 7.0e-109 398.7 300 69.7
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 3.0e-99 366.7 248 69.8
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 6.2e-97 359.0 408 49.8
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 1.5e-90 337.8 291 60.8
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 2.4e-85 320.5 523 38.8
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 3.9e-83 313.2 225 68.0
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 3.1e-80 303.5 267 60.3
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 5.7e-66 256.1 500 33.8
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 8.4e-62 242.3 172 66.9
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 4.7e-44 183.3 139 65.5
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 7.7e-39 166.0 107 81.3
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 3.8e-38 163.7 451 31.3
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 8.5e-30 136.0 94 74.5
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 1.1e-29 135.6 87 75.9
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.0e-26 124.8 378 27.0
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 5.0e-22 110.2 385 27.0
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 4.7e-20 103.6 73 61.6
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.8e-19 99.8 115 47.8
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 1.5e-18 98.6 171 32.2
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 2.2e-17 94.7 93 55.9
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.9e-17 93.6 65 69.2
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 8.0e-12 76.3 78 55.1
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 4.0e-11 73.9 40 75.0
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.0e-10 71.6 115 37.4
MCO09G155 Micromonas commoda HOM05D005216 ORTHO05D006453 8.3e-09 66.2 393 23.9
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 4.1e-08 63.9 98 41.8


User provided reference genes

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