Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 4.8e-140 501.1 248 100.0
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 8.8e-126 453.8 246 92.3
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 1.9e-120 436.0 248 86.7
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 1.2e-106 390.2 242 78.1
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 4.5e-106 388.3 235 81.3
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 5.9e-106 387.9 243 78.2
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 5.5e-104 381.3 247 76.9
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 7.2e-104 380.9 244 77.9
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 3.6e-103 378.6 276 71.0
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 8.0e-103 377.5 245 75.1
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 1.0e-102 377.1 229 81.7
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 3.0e-102 375.6 239 77.0
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 4.0e-102 375.2 275 70.5
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 5.2e-102 374.8 242 76.0
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 5.2e-102 374.8 276 70.3
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 5.2e-102 374.8 245 74.7
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 8.8e-102 374.0 238 77.7
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 1.5e-101 373.2 237 78.5
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 2.0e-101 372.9 280 69.6
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 9.8e-101 370.5 275 69.8
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 9.8e-101 370.5 238 76.5
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 2.2e-100 369.4 238 76.9
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 8.3e-100 367.5 238 76.1
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 1.8e-99 366.3 240 75.8
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.4e-99 365.9 229 78.2
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.4e-99 365.9 229 77.3
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 2.4e-99 365.9 229 77.7
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 4.1e-99 365.2 245 73.9
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 5.4e-99 364.8 238 76.1
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 9.1e-99 364.0 238 75.6
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 1.6e-98 363.2 245 73.1
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 1.6e-98 363.2 246 73.2
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 2.0e-98 362.8 246 74.8
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 2.7e-98 362.5 249 73.5
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.3e-97 360.1 237 75.1
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.7e-97 359.8 245 73.1
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 1.7e-97 359.8 254 70.9
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 6.6e-97 357.8 242 73.6
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 6.6e-97 357.8 247 73.7
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 1.6e-95 353.2 246 71.1
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 1.8e-94 349.7 241 73.4
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 4.0e-94 348.6 241 72.2
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 3.4e-93 345.5 243 72.0
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 5.7e-93 344.7 276 65.2
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 7.5e-93 344.4 241 71.0
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 2.8e-92 342.4 247 69.6
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 8.3e-92 340.9 238 72.7
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 2.4e-91 339.3 236 69.5
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 5.4e-91 338.2 246 69.1
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 7.0e-91 337.8 244 70.5
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 9.2e-91 337.4 253 66.0
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 9.2e-91 337.4 247 69.6
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.2e-90 337.0 246 68.3
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 1.2e-90 337.0 233 71.2
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 1.6e-90 336.7 247 70.9
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 1.0e-89 334.0 239 70.3
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 2.3e-89 332.8 241 69.7
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 3.8e-89 332.0 242 68.2
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 5.0e-89 331.6 248 67.3
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 6.6e-89 331.3 233 72.1
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 8.6e-89 330.9 219 75.3
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 8.6e-89 330.9 242 68.6
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 1.9e-88 329.7 237 70.0
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 1.9e-88 329.7 248 66.9
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 4.3e-88 328.6 244 68.4
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 7.3e-88 327.8 229 70.3
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 7.3e-88 327.8 242 67.8
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 9.5e-88 327.4 229 70.3
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 9.5e-88 327.4 239 68.6
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 1.2e-87 327.0 239 67.8
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 2.1e-87 326.2 262 64.9
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 2.8e-87 325.9 232 68.1
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 2.8e-87 325.9 244 67.6
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 2.8e-87 325.9 239 68.2
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 4.7e-87 325.1 242 67.8
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 4.7e-87 325.1 242 67.8
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 6.1e-87 324.7 244 66.0
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 8.0e-87 324.3 241 67.2
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 1.0e-86 323.9 244 65.6
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 1.4e-86 323.6 239 67.8
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 1.8e-86 323.2 241 66.8
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 1.5e-85 320.1 249 65.1
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 1.5e-85 320.1 249 65.1
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 2.6e-85 319.3 271 62.4
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 7.5e-85 317.8 270 61.9
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 7.5e-85 317.8 252 64.3
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 9.8e-85 317.4 240 68.3
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 2.9e-84 315.8 239 66.1
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 1.6e-82 310.1 260 63.1
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 2.1e-79 299.7 249 61.4
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 3.1e-78 295.8 246 59.3
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 4.0e-78 295.4 276 54.7
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 4.4e-77 292.0 274 55.5
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 7.8e-74 281.2 224 64.7
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 6.6e-73 278.1 178 77.0
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 2.8e-71 272.7 248 58.1
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 5.8e-69 265.0 238 60.9
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 3.9e-65 252.3 175 73.1
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 6.0e-58 228.4 255 54.5
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 2.0e-53 213.4 271 43.9
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 2.9e-52 209.5 221 51.6
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 9.3e-51 204.5 256 44.9
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 7.8e-50 201.4 131 71.0
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 1.0e-49 201.1 246 51.6
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 9.6e-48 194.5 231 47.6
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 2.6e-45 186.4 128 67.2
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 1.8e-41 173.7 168 50.6
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 9.0e-38 161.4 152 59.9
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 7.9e-34 148.3 121 60.3
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 1.4e-30 137.5 120 61.7
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 9.7e-24 114.8 108 61.1
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 5.0e-20 102.4 119 49.6
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 8.5e-20 101.7 139 37.4
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 3.6e-10 69.7 63 54.0
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 7.9e-10 68.6 54 51.9
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.4e-09 67.8 38 86.8
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 3.7e-07 59.7 133 36.1


User provided reference genes

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