Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1008700 Malus domestica HOM05D001208 ORTHO05D008075 5.7e-107 391.0 201 100.0
MD17G1001600 Malus domestica HOM05D001208 ORTHO05D008075 3.1e-81 305.4 269 66.9
Prupe.3G308300 Prunus persica HOM05D001208 ORTHO05D008075 4.1e-73 278.5 269 61.7
FAN05G5470 Fragaria x ananassa HOM05D001208 ORTHO05D008075 4.1e-65 251.9 269 55.8
FAN09G2806 Fragaria x ananassa HOM05D001208 ORTHO05D008075 5.4e-65 251.5 269 55.8
FAN14G4456 Fragaria x ananassa HOM05D001208 ORTHO05D008075 5.4e-65 251.5 269 55.4
FAN02G0417 Fragaria x ananassa HOM05D001208 ORTHO05D008075 7.0e-65 251.1 269 55.0
FvH4_6g53780 Fragaria vesca HOM05D001208 ORTHO05D008075 2.7e-64 249.2 269 55.0
Cfa007210 Carpinus fangiana HOM05D001208 ORTHO05D008075 1.0e-63 247.3 265 55.5
RcHm_v2.0_Chr2g0175921 Rosa chinensis HOM05D001208 ORTHO05D008075 1.3e-63 246.9 269 55.0
Manes.15G162700 Manihot esculenta HOM05D001208 ORTHO05D008075 3.3e-62 242.3 265 54.7
CiPaw.04G039200 Carya illinoinensis HOM05D001208 ORTHO05D008075 8.0e-61 237.7 264 54.2
Ciclev10016277m.g Citrus clementina HOM05D001208 ORTHO05D008075 5.7e-59 231.5 264 53.0
QL02p070962 Quercus lobata HOM05D001208 ORTHO05D008075 9.8e-59 230.7 268 53.7
TAR629G0484 Trochodendron aralioides HOM05D001208 ORTHO05D008075 1.3e-58 230.3 265 53.2
Thecc.04G039800 Theobroma cacao HOM05D001208 ORTHO05D008075 2.8e-58 229.2 264 53.8
Potri.001G327800 Populus trichocarpa HOM05D001208 ORTHO05D008075 8.3e-58 227.6 269 51.3
Lalb_Chr25g0281101 Lupinus albus HOM05D001208 ORTHO05D008075 4.1e-57 225.3 269 51.3
Eucgr.I01632 Eucalyptus grandis HOM05D001208 ORTHO05D008075 9.2e-57 224.2 263 50.6
Dinv25650 Davidia involucrata HOM05D001208 ORTHO05D008075 1.6e-56 223.4 263 52.9
Medtr1g007800 Medicago truncatula HOM05D001208 ORTHO05D008075 1.6e-56 223.4 265 51.7
Cpa.g.sc70.122 Carica papaya HOM05D001208 ORTHO05D008075 2.7e-56 222.6 263 51.0
GSVIVG01033062001 Vitis vinifera HOM05D001208 ORTHO05D008075 2.7e-56 222.6 263 52.9
Actinidia36213 Actinidia chinensis HOM05D001208 ORTHO05D008075 3.5e-56 222.2 265 51.7
MELO3C014897.2 Cucumis melo HOM05D001208 ORTHO05D008075 3.5e-56 222.2 263 50.6
vmacro05971 Vaccinium macrocarpon HOM05D001208 ORTHO05D008075 4.5e-56 221.9 265 50.6
Potri.017G067332 Populus trichocarpa HOM05D001208 ORTHO05D008075 5.9e-56 221.5 269 51.7
CsaV3_3G026900 Cucumis sativus L. HOM05D001208 ORTHO05D008075 2.3e-55 219.5 263 50.6
Sed0020213 Sechium edule HOM05D001208 ORTHO05D008075 2.3e-55 219.5 263 51.0
Nn4g22263 Nelumbo nucifera HOM05D001208 ORTHO05D008075 2.9e-55 219.2 265 50.6
Lj1g0026775 Lotus japonicus HOM05D001208 ORTHO05D008075 5.0e-55 218.4 263 52.1
Duzib264G1149 Durio zibethinus HOM05D001208 ORTHO05D008075 8.6e-55 217.6 264 50.8
Duzib147G0492 Durio zibethinus HOM05D001208 ORTHO05D008075 1.1e-54 217.2 264 50.4
Phvul.003G171900 Phaseolus vulgaris HOM05D001208 ORTHO05D008075 1.1e-54 217.2 264 51.1
TPR.G24529 Trifolium pratense HOM05D001208 ORTHO05D008075 1.1e-54 217.2 265 50.6
CAN.G1397.5 Capsicum annuum HOM05D001208 ORTHO05D008075 1.9e-54 216.5 264 50.8
SGA_v2.0_scaffold44G16927 Striga asiatica HOM05D001208 ORTHO05D008075 1.9e-54 216.5 265 50.2
CANSAT64G1291 Cannabis sativa HOM05D001208 ORTHO05D008075 2.5e-54 216.1 263 51.3
VMungo1215G3005 Vigna mungo HOM05D001208 ORTHO05D008075 3.3e-54 215.7 264 50.4
Gohir.D09G037500 Gossypium hirsutum HOM05D001208 ORTHO05D008075 4.3e-54 215.3 264 50.4
Lalb_Chr25g0281111 Lupinus albus HOM05D001208 ORTHO05D008075 4.3e-54 215.3 269 50.2
Nitab4.5_0000441g0030 Nicotiana tabacum HOM05D001208 ORTHO05D008075 5.6e-54 214.9 263 49.8
Nitab4.5_0010244g0020 Nicotiana tabacum HOM05D001208 ORTHO05D008075 5.6e-54 214.9 263 49.8
Oeu048915.2 Olea europaea HOM05D001208 ORTHO05D008075 5.6e-54 214.9 292 47.9
Atru.chr1.2714 Acer truncatum HOM05D001208 ORTHO05D008075 7.3e-54 214.5 266 50.0
Atru.chr6.2591 Acer truncatum HOM05D001208 ORTHO05D008075 7.3e-54 214.5 255 53.3
Gohir.D04G075500 Gossypium hirsutum HOM05D001208 ORTHO05D008075 7.3e-54 214.5 266 50.8
Gorai.012G085000 Gossypium raimondii HOM05D001208 ORTHO05D008075 7.3e-54 214.5 266 50.8
Solyc07g047800.3 Solanum lycopersicum HOM05D001208 ORTHO05D008075 7.3e-54 214.5 265 50.6
Glyma.17G107900 Glycine max HOM05D001208 ORTHO05D008075 1.2e-53 213.8 264 49.2
THA.LOC104821132 Tarenaya hassleriana HOM05D001208 ORTHO05D008075 1.2e-53 213.8 265 50.2
Sopen07g024240 Solanum pennellii HOM05D001208 ORTHO05D008075 2.1e-53 213.0 265 50.2
MSTRG.3068 Avicennia marina HOM05D001208 ORTHO05D008075 2.8e-53 212.6 263 51.7
AUR62029417 Chenopodium quinoa HOM05D001208 ORTHO05D008075 2.8e-53 212.6 263 49.8
Cc07_g00990 Coffea canephora HOM05D001208 ORTHO05D008075 4.7e-53 211.8 265 50.6
DCAR_021803 Daucus carota HOM05D001208 ORTHO05D008075 4.7e-53 211.8 265 49.4
MBI11_g05338_MAGBIO Magnolia biondii HOM05D001208 ORTHO05D008075 4.7e-53 211.8 263 49.8
PGSC0003DMG402006147 Solanum tuberosum HOM05D001208 ORTHO05D008075 4.7e-53 211.8 263 49.8
Sed0025366 Sechium edule HOM05D001208 ORTHO05D008075 6.1e-53 211.5 263 49.4
Gohir.D07G237300 Gossypium hirsutum HOM05D001208 ORTHO05D008075 1.0e-52 210.7 264 47.3
Gorai.001G273200 Gossypium raimondii HOM05D001208 ORTHO05D008075 1.0e-52 210.7 264 47.3
HanXRQChr07g0198141 Helianthus annuus HOM05D001208 ORTHO05D008075 1.4e-52 210.3 263 48.7
Sc08g0005580 Simmondsia chinensis HOM05D001208 ORTHO05D008075 1.4e-52 210.3 233 51.5
ClCG05G013650 Citrullus lanatus HOM05D001208 ORTHO05D008075 1.8e-52 209.9 263 49.0
Psat6g035480 Pisum sativum HOM05D001208 ORTHO05D008075 1.8e-52 209.9 264 50.0
Gohir.A07G230100 Gossypium hirsutum HOM05D001208 ORTHO05D008075 3.1e-52 209.1 264 46.6
Gorai.006G042900 Gossypium raimondii HOM05D001208 ORTHO05D008075 3.1e-52 209.1 268 49.6
TWI32G0053 Tripterygium wilfordii HOM05D001208 ORTHO05D008075 4.0e-52 208.8 264 48.1
Lsat_1_v5_gn_2_94301 Lactuca sativa HOM05D001208 ORTHO05D008075 2.6e-51 206.1 263 48.3
Sabra17G0058700 Salix brachista HOM05D001208 ORTHO05D008075 2.6e-51 206.1 271 48.7
arahy.Tifrunner.gnm1.ann1.EKF4XY Arachis hypogaea HOM05D001208 ORTHO05D008075 3.4e-51 205.7 271 47.6
ECA238G0379 Erigeron canadensis HOM05D001208 ORTHO05D008075 4.4e-51 205.3 263 47.9
Hund07876 Selenicereus undatus HOM05D001208 ORTHO05D008075 1.7e-50 203.4 263 47.5
Gohir.A05G336900 Gossypium hirsutum HOM05D001208 ORTHO05D008075 2.2e-50 203.0 286 46.9
Peaxi162Scf00776g00122 Petunia axillaris HOM05D001208 ORTHO05D008075 2.2e-50 203.0 253 49.8
Aqoxy5G03300 Aquilegia oxysepala HOM05D001208 ORTHO05D008075 2.9e-50 202.6 269 48.3
EL10Ac6g15435 Beta vulgaris HOM05D001208 ORTHO05D008075 2.9e-50 202.6 263 49.0
Ca_12781_v3 Cicer arietinum L. HOM05D001208 ORTHO05D008075 3.7e-50 202.2 268 48.5
ClCG05G013660 Citrullus lanatus HOM05D001208 ORTHO05D008075 4.9e-50 201.8 295 44.7
Migut.K01476 Erythranthe guttata HOM05D001208 ORTHO05D008075 1.4e-49 200.3 269 47.6
PGR142G2960 Punica granatum HOM05D001208 ORTHO05D008075 5.4e-49 198.4 265 45.7
unitig_748.g7134 Utricularia gibba HOM05D001208 ORTHO05D008075 1.2e-48 197.2 264 48.1
Sp3g00130 Schrenkiella parvula HOM05D001208 ORTHO05D008075 1.6e-48 196.8 265 45.7
Hma1.2p1_1057F.1_g252710 Hydrangea macrophylla HOM05D001208 ORTHO05D008075 3.5e-48 195.7 266 50.0
PSO017G3242 Papaver somniferum HOM05D001208 ORTHO05D008075 3.5e-48 195.7 264 45.8
Ah.02g119870 Amaranthus hybridus HOM05D001208 ORTHO05D008075 7.8e-48 194.5 263 46.4
CDE08G1580 Ceratophyllum demersum HOM05D001208 ORTHO05D008075 1.3e-47 193.7 263 45.6
AUR62003424 Chenopodium quinoa HOM05D001208 ORTHO05D008075 1.3e-47 193.7 301 42.5
PSO478G2417 Papaver somniferum HOM05D001208 ORTHO05D008075 3.9e-47 192.2 265 45.3
Aqoxy5G03299 Aquilegia oxysepala HOM05D001208 ORTHO05D008075 6.6e-47 191.4 267 46.4
arahy.Tifrunner.gnm1.ann1.G86GHA Arachis hypogaea HOM05D001208 ORTHO05D008075 6.6e-47 191.4 311 41.5
HPP92_024288 Vanilla planifolia HOM05D001208 ORTHO05D008075 1.5e-46 190.3 264 45.5
Lju41C54T2 Lonicera japonica HOM05D001208 ORTHO05D008075 5.6e-46 188.3 301 41.9
Carub.0003s0011 Capsella rubella HOM05D001208 ORTHO05D008075 1.6e-45 186.8 266 44.4
CARHR074980 Cardamine hirsuta HOM05D001208 ORTHO05D008075 2.1e-45 186.4 265 44.5
Aa31LG5G11100 Aethionema arabicum HOM05D001208 ORTHO05D008075 4.7e-45 185.3 265 44.9
HPP92_023386 Vanilla planifolia HOM05D001208 ORTHO05D008075 1.1e-44 184.1 264 43.2
AL3G10110 Arabidopsis lyrata HOM05D001208 ORTHO05D008075 3.1e-44 182.6 265 44.9
AT3G01980 Arabidopsis thaliana HOM05D001208 ORTHO05D008075 3.1e-44 182.6 265 43.4
A08p01850 Brassica napus HOM05D001208 ORTHO05D008075 1.2e-43 180.6 264 43.9
BcaC01g01355 Brassica carinata HOM05D001208 ORTHO05D008075 2.0e-43 179.9 264 43.6
BraA08t32237Z Brassica rapa HOM05D001208 ORTHO05D008075 3.4e-43 179.1 264 43.6
Thhalv10021329m.g Eutrema salsugineum HOM05D001208 ORTHO05D008075 1.7e-42 176.8 266 43.2
Rhsim10G0005000 Rhododendron simsii HOM05D001208 ORTHO05D008075 2.2e-42 176.4 234 47.0
CSS0020948 Camellia sinensis var. sinensis HOM05D001208 ORTHO05D008075 1.1e-41 174.1 263 44.9
CDE04G2451 Ceratophyllum demersum HOM05D002771 ORTHO05D008075 1.1e-38 164.1 231 44.2
COL.COLO4_13288 Corchorus olitorius HOM05D001208 ORTHO05D008075 1.4e-36 157.1 224 46.4
Zm00001eb210770 Zea mays HOM05D001208 ORTHO05D008075 4.0e-36 155.6 266 40.2
BcaB04g17124 Brassica carinata HOM05D001208 ORTHO05D008075 3.4e-35 152.5 256 39.8
Gohir.A09G036500 Gossypium hirsutum HOM05D001208 ORTHO05D008075 7.5e-35 151.4 216 45.8
C03p90990 Brassica napus HOM05D001208 ORTHO05D008075 1.3e-34 150.6 243 41.6
Os03g0850000 Oryza sativa ssp. japonica HOM05D001208 ORTHO05D008075 2.9e-34 149.4 266 38.7
HPP92_024310 Vanilla planifolia HOM05D001208 ORTHO05D008075 2.4e-33 146.4 129 62.0
QL02p070951 Quercus lobata HOM05D001208 ORTHO05D008075 1.2e-27 127.5 176 47.2
ATR0561G256 Amborella trichopoda HOM05D001208 ORTHO05D008075 1.3e-15 87.4 169 36.1
Oeu063020.3 Olea europaea HOM05D000396 ORTHO05D000116 3.9e-15 85.9 83 59.0
SMO172G0163 Selaginella moellendorffii HOM05D001208 ORTHO05D008075 2.5e-14 83.2 132 38.6
Mapoly0095s0044 Marchantia polymorpha HOM05D001208 ORTHO05D008075 1.4e-12 77.4 260 26.5
AagrBONN_evm.TU.Sc2ySwM_344.1155 Anthoceros agrestis HOM05D001208 ORTHO05D008075 2.4e-12 76.6 272 25.4
Lsat_1_v5_gn_4_40481 Lactuca sativa HOM05D001208 ORTHO05D008075 5.8e-11 72.0 119 42.0
Pp3c3_8860 Physcomitrium patens HOM05D001208 ORTHO05D008075 2.2e-10 70.1 270 27.4
MBI04_g21999_MAGBIO Magnolia biondii HOM05D001208 ORTHO05D008075 3.2e-09 66.2 67 52.2
Haze_14894 Corylus avellana HOM05D001208 ORTHO05D008075 3.5e-08 62.8 37 81.1
Pp3c20_20520 Physcomitrium patens HOM05D001208 ORTHO05D001593 2.3e-07 60.1 119 37.0


User provided reference genes

Program Settings