Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 2.6e-234 815.1 422 100.0
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 5.9e-223 777.3 426 93.9
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.8e-206 721.5 400 91.5
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.5e-189 666.4 396 84.8
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 8.9e-187 657.1 431 80.7
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 8.9e-187 657.1 431 80.7
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.5e-186 656.4 431 80.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.4e-184 649.8 431 81.0
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 6.0e-183 644.4 431 79.6
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 8.1e-164 580.9 403 74.7
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 5.2e-163 578.2 391 76.5
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 3.2e-160 568.9 424 71.9
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 2.1e-159 566.2 393 76.3
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.7e-159 565.8 423 72.3
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 3.5e-159 565.5 389 74.8
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.3e-156 557.0 390 71.5
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 4.0e-155 552.0 401 73.1
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 6.9e-155 551.2 434 71.2
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 2.6e-154 549.3 388 69.8
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 4.5e-154 548.5 433 71.4
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 4.5e-154 548.5 429 69.9
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.9e-153 545.8 390 72.3
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 4.9e-153 545.0 393 71.0
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 6.4e-153 544.7 426 69.7
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 8.4e-153 544.3 393 73.3
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.1e-152 543.9 431 70.8
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.9e-152 543.1 427 69.3
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.2e-151 540.4 403 68.7
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 2.7e-151 539.3 427 68.1
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 3.5e-151 538.9 391 71.6
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 3.5e-151 538.9 390 70.5
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 2.3e-150 536.2 390 71.0
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.1e-149 533.9 395 70.9
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 3.3e-149 532.3 424 68.6
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 5.6e-149 531.6 391 70.1
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.6e-148 530.0 388 70.4
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.1e-148 529.6 389 71.2
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 4.8e-148 528.5 406 68.5
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 8.1e-148 527.7 391 72.1
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.4e-147 526.9 401 67.3
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.8e-147 526.6 390 70.0
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.1e-147 525.8 427 67.2
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 3.1e-147 525.8 392 69.9
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.5e-146 523.5 405 66.9
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.5e-146 521.9 401 66.6
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 7.6e-146 521.2 392 68.6
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.6e-146 521.2 400 66.5
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.3e-145 520.4 404 67.6
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.2e-145 519.6 404 67.3
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.2e-145 519.6 404 67.3
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.2e-145 519.6 392 70.2
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 6.4e-145 518.1 405 65.4
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.7e-143 512.7 391 71.6
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 3.5e-143 512.3 432 64.8
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 3.5e-143 512.3 424 68.4
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 3.0e-142 509.2 433 66.7
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.9e-141 506.5 400 67.2
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.9e-141 506.5 404 67.6
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 7.4e-141 504.6 401 67.1
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.3e-140 503.8 392 65.8
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.3e-140 503.8 394 68.3
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.6e-140 503.4 395 67.6
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 2.8e-140 502.7 391 65.5
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 4.8e-140 501.9 406 67.5
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 6.2e-140 501.5 400 67.2
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 6.2e-140 501.5 429 66.9
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 6.2e-140 501.5 394 67.3
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.1e-139 500.7 390 67.7
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 1.4e-139 500.4 413 65.4
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 7.6e-138 494.6 396 65.9
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.0e-137 494.2 391 67.0
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.0e-137 494.2 406 65.8
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.2e-137 493.0 395 66.8
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.5e-136 489.6 400 65.8
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 4.2e-136 488.8 390 66.9
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 4.2e-136 488.8 400 65.8
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 5.5e-136 488.4 402 64.9
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 9.3e-136 487.6 390 67.2
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.7e-135 486.1 401 65.3
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 7.9e-135 484.6 426 65.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.3e-134 483.0 412 63.6
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.3e-134 483.0 426 65.5
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.3e-134 483.0 426 65.5
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 4.3e-133 478.8 405 64.2
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 1.3e-132 477.2 428 64.5
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.6e-132 476.9 393 65.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.8e-132 476.1 359 67.7
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.7e-132 475.7 385 65.7
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 3.7e-132 475.7 385 65.5
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 6.3e-132 474.9 394 64.2
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.4e-131 473.0 396 63.9
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 2.4e-131 473.0 386 66.6
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.2e-130 470.7 395 64.3
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 4.5e-130 468.8 407 63.6
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 5.9e-130 468.4 394 65.5
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.7e-129 466.8 394 65.5
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.9e-128 463.4 439 59.9
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.5e-128 463.0 390 64.4
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.5e-128 463.0 407 62.9
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.7e-127 459.5 405 63.5
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.3e-126 456.4 400 61.2
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.8e-123 446.8 400 62.2
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.8e-123 446.8 425 60.7
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 3.1e-123 446.0 400 62.2
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.0e-122 443.4 390 62.3
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 2.6e-122 443.0 400 61.8
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 7.7e-122 441.4 387 60.2
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 4.2e-120 435.6 394 59.4
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 5.5e-120 435.3 398 61.3
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 7.9e-119 431.4 398 60.8
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.3e-113 414.1 323 65.9
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.5e-112 409.8 406 55.4
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.4e-112 407.9 407 54.5
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.7e-111 406.4 407 54.3
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.5e-109 400.6 417 55.9
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.6e-109 399.8 383 59.8
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.6e-109 399.8 383 59.5
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.6e-106 390.6 384 57.8
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 4.2e-104 382.5 385 55.6
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 6.1e-103 378.6 312 65.4
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.7e-102 375.2 396 51.8
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 8.6e-89 331.6 427 48.2
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.2e-85 321.2 346 53.5
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.6e-82 310.8 243 68.7
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.6e-66 257.7 397 40.3
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.5e-64 250.4 291 48.8
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 3.1e-62 243.4 240 57.9
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 6.4e-60 235.7 226 53.5
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.4e-59 234.6 252 49.6
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.6e-58 231.1 149 81.2
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 6.0e-58 229.2 154 75.3
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.3e-57 227.3 205 59.5
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 4.3e-56 223.0 189 71.4
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.2e-53 214.9 148 75.0
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 3.0e-49 200.3 151 67.5
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 5.3e-46 189.5 357 36.4
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 3.5e-42 176.8 314 35.0
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 2.5e-24 117.5 112 59.8
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-16 92.0 69 66.7
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.3e-15 88.6 76 57.9
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.6e-10 71.6 160 32.5
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 3.3e-08 63.9 36 69.4
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 1.4e-06 58.5 133 34.6
Pp3c24_9340 Physcomitrium patens HOM05D003180 ORTHO05D003664 3.1e-06 57.4 153 33.3


User provided reference genes

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