Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 0.0e+00 1380.9 740 100.0
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 0.0e+00 1211.4 727 89.0
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 6.5e-302 1040.4 732 79.1
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 1.4e-288 996.1 686 77.1
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.8e-284 981.9 718 73.0
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 8.1e-276 953.7 755 69.0
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 3.2e-264 915.2 666 73.1
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 4.9e-241 838.2 521 79.8
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 4.9e-241 838.2 719 67.9
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 7.4e-237 824.3 770 61.4
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 7.9e-223 777.7 666 64.4
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.0e-222 777.3 734 60.2
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 1.5e-221 773.5 728 59.1
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 2.1e-215 753.1 727 57.5
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 2.6e-213 746.1 717 58.3
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 9.7e-213 744.2 682 60.3
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 3.7e-212 742.3 682 60.0
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 1.4e-211 740.3 709 58.0
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 4.1e-211 738.8 674 60.8
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 5.3e-211 738.4 724 57.7
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.5e-210 736.9 722 57.5
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 1.0e-209 734.2 673 59.9
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 3.8e-209 732.3 673 59.7
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.4e-208 730.3 724 57.2
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.9e-208 729.9 657 59.5
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.6e-207 726.9 681 61.4
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.6e-207 726.9 730 58.6
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 5.7e-205 718.4 730 57.7
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.3e-204 717.2 679 57.1
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 3.1e-203 712.6 665 59.5
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 9.1e-203 711.1 740 55.4
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 4.5e-202 708.8 674 59.5
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 7.7e-202 708.0 684 57.6
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 3.8e-201 705.7 657 59.8
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.1e-200 704.1 628 62.1
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 3.2e-200 702.6 558 66.1
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 2.7e-199 699.5 676 58.4
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 1.2e-197 694.1 719 55.8
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 7.5e-197 691.4 722 55.8
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 4.8e-196 688.7 713 55.3
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 1.8e-195 686.8 722 55.4
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 1.1e-192 677.6 719 55.2
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.5e-192 677.2 709 55.6
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 2.7e-191 672.9 663 57.9
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 2.7e-191 672.9 627 58.1
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.4e-190 670.6 727 53.9
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 2.2e-188 663.3 648 56.8
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 3.5e-186 656.0 668 55.2
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 6.5e-185 651.7 674 55.0
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 3.3e-184 649.4 722 53.5
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 7.2e-184 648.3 672 54.9
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.8e-182 643.7 569 60.1
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.5e-181 640.6 731 51.7
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 3.4e-181 639.4 680 53.5
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 4.4e-181 639.0 729 51.6
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 7.5e-181 638.3 673 54.4
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 9.8e-181 637.9 677 52.9
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.7e-180 637.1 657 56.9
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 6.3e-180 635.2 666 54.2
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 8.3e-180 634.8 737 52.6
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 1.6e-178 630.6 690 52.2
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.7e-178 629.8 666 54.8
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 2.7e-178 629.8 719 52.3
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.5e-176 624.0 686 53.8
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 3.6e-175 619.4 724 51.0
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 4.7e-175 619.0 653 53.4
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 4.7e-175 619.0 675 52.3
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 8.9e-174 614.8 724 51.1
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 7.5e-173 611.7 674 53.4
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.4e-171 607.4 607 55.0
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 3.2e-171 606.3 682 51.9
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 7.0e-171 605.1 668 51.3
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 6.6e-169 598.6 634 54.7
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.5e-168 597.4 688 50.9
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 1.5e-168 597.4 688 50.9
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 1.5e-168 597.4 700 52.0
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.3e-168 596.3 487 61.6
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 7.3e-168 595.1 695 51.7
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 6.2e-167 592.0 685 50.8
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.4e-166 590.9 655 53.7
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 5.2e-166 589.0 662 53.3
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 4.4e-165 585.9 651 52.1
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 2.2e-164 583.6 605 55.0
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 2.4e-163 580.1 688 51.3
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 3.3e-160 569.7 662 51.5
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 1.3e-156 557.8 677 48.9
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.1e-155 554.7 422 68.0
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 4.3e-152 542.7 630 50.2
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 6.8e-150 535.4 681 47.9
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.2e-149 534.6 719 48.1
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 1.7e-148 530.8 648 49.1
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.1e-144 518.1 512 56.2
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 8.1e-135 485.3 678 45.7
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.1e-126 458.4 509 54.0
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 5.3e-126 456.1 435 58.2
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.2e-125 454.9 579 47.7
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 3.4e-125 453.4 678 44.5
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 6.7e-121 439.1 668 41.8
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 9.0e-110 402.1 661 39.2
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.7e-103 381.3 683 39.2
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 1.1e-99 368.6 538 44.4
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 4.2e-99 366.7 647 39.4
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 1.5e-96 358.2 522 45.2
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 3.1e-94 350.5 501 45.5
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 1.9e-75 288.1 735 32.0
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 2.2e-63 248.1 420 41.2
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 2.7e-61 241.1 335 47.8
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.9e-59 235.0 321 46.4
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 2.3e-57 228.0 658 30.4
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 3.6e-42 177.6 255 43.1
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.6e-42 177.6 170 57.1
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 4.0e-41 174.1 206 51.9
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.4e-30 138.3 191 45.0
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 4.2e-30 137.5 164 54.3
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 6.0e-29 133.7 623 23.8
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 7.8e-29 133.3 264 42.4
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 7.8e-29 133.3 135 56.3
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 6.2e-26 123.6 703 23.0
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 2.0e-24 118.6 94 61.7
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 3.0e-20 104.8 128 51.6
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 2.8e-18 98.2 105 54.3
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 3.8e-15 87.8 99 49.5
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 5.1e-12 77.4 168 29.2
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 4.3e-11 74.3 77 54.5
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 6.5e-07 60.5 67 50.7
ECA236G2819 Erigeron canadensis HOM05D000463 ORTHO05D001294 4.2e-06 57.8 96 30.2
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.2e-06 57.8 67 35.8
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.2e-06 57.8 66 36.4
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 4.2e-06 57.8 70 42.9
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 4.2e-06 57.8 70 35.7
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 5.5e-06 57.4 73 32.9
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 5.5e-06 57.4 66 37.9
Zm00001eb427210 Zea mays HOM05D000463 ORTHO05D001294 5.5e-06 57.4 64 37.5
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 7.1e-06 57.0 66 36.4
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 9.3e-06 56.6 60 38.3


User provided reference genes

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