Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 0.0e+00 1075.1 523 100.0
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 1.4e-298 1028.9 523 96.0
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 8.0e-270 933.3 517 84.5
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.7e-265 918.3 515 83.3
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.8e-261 905.6 537 79.9
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 6.8e-253 877.1 514 78.8
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 2.3e-248 862.1 516 76.9
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 2.9e-248 861.7 513 77.2
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 9.5e-247 856.7 519 78.2
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 1.2e-246 856.3 513 76.6
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 2.6e-244 848.6 513 75.2
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 3.4e-244 848.2 516 76.4
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 7.5e-244 847.0 514 77.4
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.7e-243 845.9 514 77.2
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 2.2e-243 845.5 515 76.1
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 2.9e-243 845.1 514 79.0
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 6.4e-243 844.0 513 76.2
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 1.8e-242 842.4 527 74.8
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 2.4e-242 842.0 513 76.8
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 1.2e-241 839.7 513 75.0
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 6.6e-240 833.9 515 73.2
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 6.6e-240 833.9 515 73.4
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 8.6e-240 833.6 513 74.9
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 1.5e-239 832.8 513 75.4
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 3.3e-239 831.6 515 73.4
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 5.6e-239 830.9 515 73.4
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 7.3e-239 830.5 513 75.0
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.2e-238 829.7 515 74.6
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 8.0e-238 827.0 515 74.6
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 3.1e-237 825.1 513 75.4
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 4.0e-237 824.7 513 74.9
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 2.0e-236 822.4 515 73.6
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 2.6e-236 822.0 514 74.1
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 3.4e-236 821.6 517 73.9
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 3.4e-236 821.6 517 74.1
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 9.8e-236 820.1 513 75.2
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 1.3e-235 819.7 515 73.4
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 4.9e-235 817.8 513 74.1
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 2.4e-234 815.5 512 71.9
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 4.1e-234 814.7 517 73.3
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 9.2e-234 813.5 512 71.3
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 2.7e-233 812.0 513 73.7
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 3.5e-233 811.6 513 73.9
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 4.6e-233 811.2 518 73.4
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 7.8e-233 810.4 509 73.1
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.0e-232 810.1 517 71.6
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.3e-232 809.7 515 73.2
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 8.6e-232 807.0 513 73.1
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.2e-230 803.1 512 70.3
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 2.8e-230 802.0 512 70.5
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 2.8e-230 802.0 513 74.7
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 3.6e-230 801.6 513 72.9
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 8.1e-230 800.4 514 72.2
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 1.4e-229 799.7 573 67.2
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 4.0e-229 798.1 514 71.8
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 2.0e-228 795.8 512 69.7
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 2.0e-228 795.8 510 71.6
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 5.8e-228 794.3 515 71.1
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 1.3e-227 793.1 513 70.6
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.7e-227 792.7 513 70.8
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 1.7e-227 792.7 513 70.8
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 2.4e-226 788.9 513 70.4
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.4e-226 788.9 509 74.1
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 3.2e-226 788.5 513 70.6
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 4.1e-226 788.1 402 93.5
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 1.6e-225 786.2 513 70.2
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 6.0e-225 784.3 515 71.5
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 1.7e-224 782.7 497 72.8
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 1.7e-224 782.7 490 73.1
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 9.5e-223 776.9 509 72.1
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 1.8e-221 772.7 537 67.0
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 3.1e-221 771.9 538 66.9
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 5.2e-221 771.2 470 75.5
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 4.1e-218 761.5 468 75.6
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.0e-217 757.7 579 66.5
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.9e-216 755.0 517 71.6
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 3.6e-214 748.4 521 68.5
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.2e-212 743.4 514 68.9
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 6.0e-209 731.1 554 63.5
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 2.5e-207 725.7 580 64.7
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 5.6e-207 724.5 393 85.0
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 9.6e-207 723.8 517 65.6
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 2.1e-206 722.6 517 69.2
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 3.6e-206 721.8 517 64.6
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 6.2e-206 721.1 520 65.2
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 1.2e-204 716.8 518 66.8
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 2.9e-203 712.2 438 76.3
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 2.1e-201 706.1 517 63.8
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 6.7e-200 701.0 679 53.6
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 3.1e-197 692.2 517 61.5
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 4.0e-197 691.8 435 72.4
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.2e-195 686.0 549 63.4
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 2.8e-190 669.1 499 66.5
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 8.4e-187 657.5 502 65.1
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.7e-185 652.5 514 62.6
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 1.1e-178 630.6 420 67.1
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.0e-172 609.8 515 61.6
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 3.0e-168 595.9 492 61.0
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 8.2e-166 587.8 527 53.1
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 6.9e-165 584.7 361 75.3
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 1.8e-160 570.1 523 53.0
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 6.7e-152 541.6 331 75.5
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.2e-151 540.8 507 52.3
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 6.5e-147 525.0 303 79.2
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 7.0e-141 505.0 346 69.7
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 7.7e-140 501.5 515 51.7
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 4.4e-135 485.7 283 77.7
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 5.7e-135 485.3 437 53.5
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.7e-131 473.8 346 67.9
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 1.2e-129 467.6 545 43.7
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 7.5e-127 458.4 345 63.8
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.2e-124 451.1 251 81.3
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.1e-112 411.4 286 67.1
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.3e-110 404.4 231 80.5
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 1.3e-110 404.4 231 80.5
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 3.2e-109 399.8 229 79.5
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 3.5e-108 396.4 229 79.0
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 2.7e-84 317.0 526 39.0
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.3e-82 309.7 207 72.5
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.1e-81 307.4 204 72.5
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 2.0e-79 300.8 164 81.7
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 1.1e-77 295.0 240 60.8
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 1.2e-76 291.6 553 34.9
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 2.2e-70 270.8 547 33.3
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 7.9e-68 262.3 171 72.5
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 2.3e-67 260.8 509 35.2
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 1.5e-66 258.1 486 36.0
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 9.0e-64 248.8 353 43.9
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 5.3e-56 223.0 198 54.0
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 1.5e-50 204.9 157 63.7
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 5.3e-48 196.4 262 42.7
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 4.1e-40 170.2 335 34.0
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 1.4e-35 155.2 85 77.6
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 1.4e-32 145.2 99 69.7
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.1e-32 142.5 103 70.9
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 1.5e-29 135.2 107 61.7
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.2e-29 134.0 85 71.8
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.2e-28 132.1 194 42.3
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 4.7e-28 130.2 77 80.5
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 1.0e-27 129.0 120 53.3
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 9.8e-26 122.5 98 60.2
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 9.8e-18 95.9 270 29.3
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.1e-12 78.2 41 73.2
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 1.8e-11 75.1 50 70.0
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 4.0e-11 73.9 96 42.7
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 8.3e-09 66.2 44 72.7
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 2.4e-08 64.7 60 50.0
FAN19G1644 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.0e-07 61.6 70 50.0
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 3.5e-07 60.8 79 44.3
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 1.3e-06 58.9 79 36.7


User provided reference genes

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