Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1241100 Malus domestica HOM05D005152 ORTHO05D006162 8.4e-120 433.7 221 100.0
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 4.0e-98 361.7 226 85.8
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 2.9e-80 302.4 224 71.0
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 6.3e-67 258.1 229 63.8
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 7.0e-66 254.6 237 60.3
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.0e-65 253.1 229 61.6
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 5.9e-65 251.5 237 60.8
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.7e-64 250.0 237 60.8
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.2e-63 245.7 236 60.2
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 1.3e-51 207.2 225 52.4
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 1.3e-51 207.2 220 55.0
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 1.3e-51 207.2 227 55.1
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 2.2e-51 206.5 247 47.8
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 3.7e-51 205.7 227 55.1
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 1.4e-50 203.8 228 53.5
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 7.0e-50 201.4 224 54.9
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 5.0e-48 195.3 226 50.4
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 6.5e-48 194.9 233 50.2
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 6.1e-46 188.3 227 48.5
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 6.1e-46 188.3 226 49.6
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 6.1e-46 188.3 241 48.5
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 8.8e-45 184.5 228 49.1
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 1.5e-44 183.7 227 48.5
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 2.0e-44 183.3 227 48.5
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 2.0e-44 183.3 247 49.4
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 2.6e-44 183.0 227 47.1
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 3.4e-44 182.6 228 50.4
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 9.8e-44 181.0 244 46.7
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 9.8e-44 181.0 239 46.9
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 1.3e-43 180.6 227 48.5
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 2.8e-43 179.5 230 50.0
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 6.3e-43 178.3 228 49.6
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 1.1e-42 177.6 231 46.3
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 7.0e-42 174.9 226 46.9
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 1.2e-41 174.1 232 45.7
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 1.2e-41 174.1 232 45.7
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 2.0e-41 173.3 240 44.6
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 3.5e-41 172.6 218 45.4
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 4.5e-41 172.2 245 43.7
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 5.9e-41 171.8 243 44.4
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 1.0e-40 171.0 225 46.2
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 1.3e-40 170.6 222 45.5
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 2.3e-40 169.9 223 46.6
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 2.9e-40 169.5 229 46.7
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 6.6e-40 168.3 228 49.1
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 4.3e-39 165.6 251 42.6
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 1.6e-38 163.7 243 43.2
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 2.8e-38 162.9 262 41.6
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 3.6e-38 162.5 230 44.3
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 6.1e-38 161.8 229 41.9
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 8.0e-38 161.4 229 44.1
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 5.2e-37 158.7 213 45.5
Rhsim13G0207500 Rhododendron simsii HOM05D005152 ORTHO05D006162 2.0e-36 156.8 233 44.2
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 7.5e-36 154.8 225 44.0
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 9.8e-36 154.5 242 40.5
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 3.2e-34 149.4 222 42.8
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 7.0e-34 148.3 234 41.9
Atru.chr11.1397 Acer truncatum HOM05D005152 ORTHO05D006162 3.5e-33 146.0 167 50.3
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 4.6e-33 145.6 230 41.7
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 4.6e-33 145.6 238 40.8
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 5.9e-33 145.2 236 40.7
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 7.8e-33 144.8 231 39.4
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 1.7e-32 143.7 217 44.2
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 2.3e-32 143.3 231 38.5
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 3.6e-30 136.0 239 38.9
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 6.2e-30 135.2 227 40.5
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 1.8e-29 133.7 237 38.0
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 3.1e-29 132.9 231 35.1
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 5.2e-29 132.1 234 38.0
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 6.8e-29 131.7 233 37.8
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.5e-28 130.6 232 37.9
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 2.6e-28 129.8 244 37.3
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 3.4e-28 129.4 231 38.1
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 7.5e-28 128.3 232 37.5
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 2.2e-27 126.7 202 43.1
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 6.4e-27 125.2 225 39.6
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 6.4e-27 125.2 224 38.8
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 1.4e-26 124.0 222 39.6
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 1.4e-26 124.0 223 36.3
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 1.4e-26 124.0 225 38.7
Oeu053695.1 Olea europaea HOM05D005152 ORTHO05D006162 7.0e-26 121.7 180 40.6
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 2.0e-25 120.2 211 35.5
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.0e-24 117.9 180 40.6
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 1.3e-24 117.5 232 37.9
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 3.3e-23 112.8 227 36.6
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 8.1e-22 108.2 246 32.1
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 8.1e-22 108.2 276 30.8
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 1.1e-21 107.8 248 32.7
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 2.3e-21 106.7 255 31.8
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 2.0e-20 103.6 239 34.7
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 5.8e-20 102.1 255 29.4
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 9.8e-20 101.3 255 29.8
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 3.7e-19 99.4 254 29.1
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 6.4e-19 98.6 177 33.3
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 1.4e-18 97.4 245 30.6
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 1.9e-18 97.1 248 29.8
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 7.1e-18 95.1 223 34.5
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 7.8e-17 91.7 243 30.9
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 7.8e-17 91.7 177 33.3
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 5.1e-16 89.0 254 28.0
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 5.1e-16 89.0 247 28.7
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 1.9e-15 87.0 229 30.1
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 2.5e-15 86.7 236 32.2
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 3.3e-15 86.3 247 27.1
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 7.3e-15 85.1 254 27.2
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 5.2e-13 79.0 54 75.9
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 3.4e-12 76.3 241 28.6
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 8.4e-11 71.6 181 28.7
Sabra16G0168500 Salix brachista HOM05D005152 ORTHO05D006162 2.7e-09 66.6 140 37.1
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 3.3e-07 59.7 194 27.3
Sc09g0001090 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.8e-06 56.6 90 35.6


User provided reference genes

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