Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 2.3e-55 218.8 120 100.0
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 8.7e-55 216.9 120 93.3
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 2.8e-53 211.8 120 90.0
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 9.7e-46 186.8 121 81.0
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.3e-45 186.4 120 81.7
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 3.7e-45 184.9 100 92.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.7e-45 184.9 100 92.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.7e-45 184.9 100 92.0
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.7e-45 184.9 100 92.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.7e-45 184.9 100 92.0
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 3.7e-45 184.9 121 80.2
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 3.7e-45 184.9 120 81.7
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.8e-45 184.5 121 82.6
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 4.8e-45 184.5 121 79.3
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.4e-44 183.0 100 91.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.8e-44 182.6 120 79.2
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 3.1e-44 181.8 120 77.5
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 3.1e-44 181.8 120 77.5
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 4.1e-44 181.4 120 80.8
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.6e-43 178.7 120 76.7
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 4.5e-43 177.9 119 77.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 7.7e-43 177.2 121 77.7
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.7e-42 176.0 118 78.8
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.7e-42 176.0 120 79.2
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 2.2e-42 175.6 119 78.2
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 2.9e-42 175.3 121 75.2
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 2.9e-42 175.3 119 76.5
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 6.5e-42 174.1 115 77.4
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 8.5e-42 173.7 116 80.2
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.1e-41 173.3 100 86.0
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.4e-41 172.9 116 77.6
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.4e-41 172.9 119 78.2
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.9e-41 172.6 115 79.1
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 4.2e-41 171.4 122 74.6
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 9.4e-41 170.2 119 75.6
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 9.4e-41 170.2 120 75.8
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 9.4e-41 170.2 120 75.8
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.2e-40 169.9 115 75.7
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 1.6e-40 169.5 117 76.1
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.1e-40 169.1 118 75.4
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.1e-40 169.1 118 75.4
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 2.1e-40 169.1 121 74.4
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 2.1e-40 169.1 119 73.1
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 2.7e-40 168.7 123 72.4
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 2.7e-40 168.7 114 75.4
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 2.7e-40 168.7 115 76.5
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.7e-40 168.7 110 78.2
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 4.7e-40 167.9 126 71.4
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 6.1e-40 167.5 119 73.9
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 6.1e-40 167.5 121 76.0
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 7.9e-40 167.2 100 85.0
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.0e-39 166.8 115 76.5
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.0e-39 166.8 117 73.5
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.0e-39 166.8 114 76.3
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.8e-39 166.0 97 83.5
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-39 166.0 119 73.9
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 2.3e-39 165.6 117 72.6
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 2.3e-39 165.6 115 75.7
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.0e-39 165.2 123 71.5
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 3.0e-39 165.2 123 71.5
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 3.9e-39 164.9 100 82.0
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.9e-39 164.9 117 75.2
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 5.1e-39 164.5 118 71.2
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 6.7e-39 164.1 123 71.5
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 6.7e-39 164.1 119 73.9
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 6.7e-39 164.1 122 71.3
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 8.8e-39 163.7 121 71.1
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 8.8e-39 163.7 116 73.3
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 1.1e-38 163.3 121 71.9
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.1e-38 163.3 122 71.3
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.1e-38 163.3 122 71.3
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.1e-38 163.3 123 70.7
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.5e-38 162.9 97 83.5
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.5e-38 162.9 97 83.5
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.5e-38 162.9 114 74.6
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.5e-38 162.9 115 73.0
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 2.6e-38 162.2 110 75.5
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 4.4e-38 161.4 124 70.2
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 5.7e-38 161.0 120 70.8
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 7.4e-38 160.6 122 70.5
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 9.7e-38 160.2 100 81.0
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 9.7e-38 160.2 124 70.2
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.3e-37 159.8 97 82.5
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.3e-37 159.8 112 73.2
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-37 159.5 120 70.8
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.7e-37 159.5 117 70.1
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.2e-37 159.1 110 72.7
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 2.8e-37 158.7 121 70.2
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 2.8e-37 158.7 121 70.2
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 3.7e-37 158.3 111 73.0
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 3.7e-37 158.3 111 73.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.7e-37 158.3 117 70.1
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 4.8e-37 157.9 122 69.7
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 4.8e-37 157.9 117 70.1
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 6.3e-37 157.5 114 71.9
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 6.3e-37 157.5 112 68.8
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-36 156.4 100 78.0
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.8e-36 156.0 117 70.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.8e-36 156.0 117 70.1
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 1.8e-36 156.0 117 69.2
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.4e-36 155.6 85 90.6
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 2.4e-36 155.6 117 69.2
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 2.4e-36 155.6 117 69.2
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 4.1e-36 154.8 99 78.8
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.3e-36 154.5 90 86.7
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.0e-34 150.2 117 69.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.7e-34 149.4 104 74.0
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.9e-33 146.0 114 65.8
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 2.5e-33 145.6 106 72.6
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 3.2e-33 145.2 100 72.0
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 5.5e-33 144.4 118 65.3
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 2.7e-32 142.1 96 75.0
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 4.7e-32 141.4 118 63.6
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 8.0e-32 140.6 119 61.3
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.0e-31 138.7 100 67.0
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 6.7e-31 137.5 100 68.0
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 6.7e-31 137.5 120 59.2
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 8.8e-31 137.1 117 64.1
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 2.6e-30 135.6 104 74.0
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 8.2e-29 130.6 84 76.2
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 5.3e-28 127.9 107 63.6
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 2.2e-26 122.5 102 64.7
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.7e-24 115.5 87 70.1
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.6e-24 115.2 84 71.4
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.2e-22 110.2 104 52.9
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.2e-22 110.2 67 80.6
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 2.0e-22 109.4 100 56.0
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.7e-21 106.3 68 76.5
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.7e-21 106.3 69 78.3
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 2.2e-21 105.9 98 54.1
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 2.8e-21 105.5 71 76.1
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 3.7e-21 105.1 70 74.3
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 6.3e-21 104.4 92 62.0
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 6.3e-21 104.4 92 62.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 9.1e-20 100.5 64 71.9
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 7.2e-17 90.9 74 67.6
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.6e-16 89.7 53 81.1
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.4e-15 86.7 57 75.4
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.8e-15 86.3 100 52.0
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-15 85.9 73 65.8
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-15 85.5 85 58.8
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 5.7e-14 81.3 101 45.5
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-13 80.1 68 66.2
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 3.7e-13 78.6 81 50.6
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 1.6e-11 73.2 60 60.0
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-10 70.5 82 53.7
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 2.9e-10 68.9 53 64.2
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 2.9e-10 68.9 121 39.7
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 2.5e-09 65.9 109 34.9
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 4.2e-09 65.1 58 63.8
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 4.2e-09 65.1 46 67.4
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 9.5e-09 63.9 41 75.6
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-08 62.8 74 50.0
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.7e-08 61.6 39 74.4
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 8.0e-08 60.8 38 76.3
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 2.3e-07 59.3 31 87.1
RcHm_v2.0_Chr1g0327371 Rosa chinensis HOM05D001997 ORTHO05D005560 4.0e-07 58.5 37 75.7
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.4e-06 55.1 38 71.1


User provided reference genes

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