Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 2.5e-113 412.1 212 100.0
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 1.5e-57 226.9 117 90.6
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 1.5e-54 216.9 117 86.3
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 7.7e-54 214.5 117 86.3
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 7.7e-54 214.5 117 85.5
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 7.7e-54 214.5 117 85.5
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 7.7e-54 214.5 117 85.5
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 7.7e-54 214.5 117 84.6
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-53 213.0 117 85.5
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-53 213.0 117 85.5
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.2e-53 213.0 117 84.6
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 2.9e-53 212.6 117 83.8
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.9e-53 212.6 117 84.6
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.8e-53 212.2 117 84.6
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 5.0e-53 211.8 117 84.6
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 5.0e-53 211.8 116 86.2
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 8.5e-53 211.1 117 82.1
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 1.9e-52 209.9 117 82.9
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 4.2e-52 208.8 117 83.8
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 4.2e-52 208.8 117 82.9
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 5.5e-52 208.4 117 81.2
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 7.2e-52 208.0 117 82.9
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 1.6e-51 206.8 117 82.1
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 2.7e-51 206.1 116 81.0
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 3.6e-51 205.7 117 78.6
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 3.6e-51 205.7 117 80.3
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 3.6e-51 205.7 117 80.3
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 4.6e-51 205.3 117 79.5
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 4.6e-51 205.3 117 79.5
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 7.9e-51 204.5 117 80.3
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 7.9e-51 204.5 117 80.3
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 7.9e-51 204.5 117 77.8
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 7.9e-51 204.5 118 80.5
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 1.8e-50 203.4 117 78.6
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 2.3e-50 203.0 117 78.6
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.3e-50 203.0 116 78.4
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 2.3e-50 203.0 117 76.9
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 3.0e-50 202.6 117 78.6
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 3.0e-50 202.6 118 80.5
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 3.9e-50 202.2 117 76.9
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 5.1e-50 201.8 117 79.5
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 6.7e-50 201.4 117 82.1
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 6.7e-50 201.4 117 78.6
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 6.7e-50 201.4 117 78.6
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 6.7e-50 201.4 117 79.5
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 6.7e-50 201.4 117 78.6
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 8.8e-50 201.1 116 78.4
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 1.1e-49 200.7 123 75.6
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 1.1e-49 200.7 117 77.8
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 1.1e-49 200.7 116 78.4
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 2.0e-49 199.9 117 81.2
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 2.0e-49 199.9 117 80.3
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 2.0e-49 199.9 117 78.6
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 2.5e-49 199.5 117 80.3
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 2.5e-49 199.5 117 80.3
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 2.5e-49 199.5 117 76.9
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 4.3e-49 198.7 117 77.8
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 5.7e-49 198.4 117 76.9
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 7.4e-49 198.0 117 77.8
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 1.3e-48 197.2 121 78.5
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 1.7e-48 196.8 117 76.9
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 2.2e-48 196.4 117 76.9
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 2.2e-48 196.4 117 76.1
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 2.2e-48 196.4 117 79.5
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 2.2e-48 196.4 116 76.7
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 2.2e-48 196.4 117 79.5
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 3.7e-48 195.7 117 78.6
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 3.7e-48 195.7 117 78.6
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 3.7e-48 195.7 117 78.6
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 3.7e-48 195.7 117 78.6
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 3.7e-48 195.7 117 78.6
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 3.7e-48 195.7 117 75.2
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 3.7e-48 195.7 117 76.9
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 4.8e-48 195.3 117 79.5
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 4.8e-48 195.3 117 79.5
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 4.8e-48 195.3 117 79.5
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 4.8e-48 195.3 117 79.5
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 4.8e-48 195.3 117 79.5
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 4.8e-48 195.3 117 77.8
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 4.8e-48 195.3 117 76.9
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 4.8e-48 195.3 117 78.6
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 6.3e-48 194.9 117 78.6
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 6.3e-48 194.9 116 78.4
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 8.2e-48 194.5 117 76.9
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 1.4e-47 193.7 117 76.9
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 1.8e-47 193.4 117 75.2
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 1.8e-47 193.4 117 76.1
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 2.4e-47 193.0 117 76.9
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 2.4e-47 193.0 117 77.8
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 2.4e-47 193.0 118 78.8
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 2.4e-47 193.0 118 79.7
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 2.4e-47 193.0 157 63.7
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 3.1e-47 192.6 117 74.4
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 4.1e-47 192.2 115 79.1
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 6.9e-47 191.4 116 76.7
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 6.9e-47 191.4 116 76.7
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 6.9e-47 191.4 117 76.9
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 6.9e-47 191.4 117 75.2
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 1.5e-46 190.3 117 75.2
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 1.5e-46 190.3 117 76.9
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 1.5e-46 190.3 117 76.1
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 2.0e-46 189.9 117 77.8
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 2.0e-46 189.9 142 67.6
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 3.4e-46 189.1 107 84.1
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 3.4e-46 189.1 117 75.2
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 3.4e-46 189.1 108 79.6
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 4.5e-46 188.7 126 70.6
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 4.5e-46 188.7 116 75.9
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 7.7e-46 188.0 109 83.5
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 1.3e-45 187.2 117 75.2
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 1.7e-45 186.8 118 76.3
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.7e-45 186.8 117 76.1
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 1.7e-45 186.8 117 75.2
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 1.7e-45 186.8 117 75.2
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.9e-45 186.0 107 79.4
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 2.9e-45 186.0 107 80.4
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 5.0e-45 185.3 108 78.7
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 2.5e-44 183.0 117 74.4
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 2.1e-43 179.9 113 71.7
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 2.1e-43 179.9 117 70.9
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 3.6e-43 179.1 108 76.9
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.7e-40 169.1 95 83.2
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 4.8e-40 168.7 107 74.8
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 2.4e-39 166.4 104 76.0
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 4.1e-39 165.6 117 69.2
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.6e-38 163.7 91 84.6
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 4.5e-38 162.2 136 58.1
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.9e-38 161.8 93 81.7
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.0e-37 161.0 91 83.5
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 1.7e-37 160.2 128 60.9
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 3.8e-37 159.1 210 43.8
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 5.0e-37 158.7 91 83.5
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 5.0e-37 158.7 95 76.8
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.5e-36 156.4 91 80.2
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 7.2e-36 154.8 91 75.8
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 3.6e-35 152.5 121 62.0
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 3.6e-35 152.5 117 61.5
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 4.7e-35 152.1 93 73.1
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 4.7e-35 152.1 86 79.1
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 1.8e-34 150.2 107 71.0
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 1.8e-34 150.2 107 71.0
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 1.5e-33 147.1 107 70.1
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 2.0e-33 146.7 130 56.9
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 4.4e-33 145.6 94 74.5
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 7.5e-33 144.8 91 72.5
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 4.8e-32 142.1 133 57.1
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 1.4e-31 140.6 166 48.8
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 1.8e-31 140.2 91 73.6
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 2.4e-31 139.8 91 72.5
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 7.0e-31 138.3 89 75.3
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 1.6e-30 137.1 117 60.7
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 2.7e-30 136.3 83 75.9
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.8e-29 132.5 77 81.8
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 1.5e-28 130.6 94 64.9
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 1.0e-26 124.4 83 67.5
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 5.7e-25 118.6 59 89.8
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 4.8e-24 115.5 91 65.9
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 1.4e-23 114.0 59 84.7
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 1.4e-23 114.0 59 84.7
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 3.1e-23 112.8 118 52.5
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 7.0e-23 111.7 59 83.1
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 3.5e-22 109.4 115 43.5
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 1.2e-19 100.9 110 43.6
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.2e-19 100.9 117 48.7
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 6.8e-18 95.1 53 77.4
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 1.2e-17 94.4 112 42.0
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.9e-16 89.0 62 69.4
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.4e-15 86.7 62 67.7
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 3.1e-15 86.3 82 57.3
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.3e-12 76.3 57 64.9
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 1.8e-10 70.5 44 70.5
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 4.1e-07 59.3 38 71.1


User provided reference genes

Program Settings