Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 6.4e-41 171.4 182 100.0
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 2.6e-26 122.9 182 83.5
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 5.4e-24 115.2 160 77.5
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 8.1e-20 101.3 159 64.2
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 1.4e-19 100.5 160 85.6
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 2.0e-18 96.7 159 82.4
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 2.0e-18 96.7 158 88.0
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 2.6e-18 96.3 158 88.0
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 4.5e-18 95.5 159 78.0
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 9.9e-18 94.4 158 87.3
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.7e-17 93.6 159 66.0
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 1.7e-17 93.6 159 79.9
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 2.2e-17 93.2 159 71.7
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 2.2e-17 93.2 160 82.5
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.9e-17 92.8 159 82.4
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 3.8e-17 92.4 159 81.8
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 3.8e-17 92.4 159 81.1
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 4.9e-17 92.0 159 83.6
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 1.1e-16 90.9 159 86.8
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.9e-16 90.1 175 73.1
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 1.9e-16 90.1 159 76.1
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.2e-16 89.4 159 74.8
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.2e-16 89.0 159 58.5
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 4.2e-16 89.0 182 65.4
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 7.1e-16 88.2 133 62.4
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.2e-15 87.4 164 72.6
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.2e-15 87.4 160 68.8
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.6e-15 87.0 160 78.1
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.6e-15 87.0 158 82.9
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 2.1e-15 86.7 158 84.8
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 2.7e-15 86.3 133 85.0
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 3.5e-15 85.9 155 80.6
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 3.5e-15 85.9 133 79.7
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 7.9e-15 84.7 181 70.2
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.3e-14 84.0 133 82.7
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.3e-14 84.0 133 80.5
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 1.3e-14 84.0 159 72.3
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 2.3e-14 83.2 160 76.2
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 2.3e-14 83.2 158 86.7
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.9e-14 82.4 164 67.7
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 3.9e-14 82.4 133 83.5
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 6.7e-14 81.6 159 82.4
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.1e-13 80.9 129 62.0
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.1e-13 80.9 155 76.1
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 1.1e-13 80.9 159 79.2
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.5e-13 80.5 159 79.9
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 1.5e-13 80.5 160 68.8
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.5e-13 80.5 171 67.3
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.9e-13 80.1 160 70.6
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.5e-13 79.7 160 66.9
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.5e-13 79.7 160 73.1
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 3.3e-13 79.3 160 65.0
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 3.3e-13 79.3 160 65.0
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 3.3e-13 79.3 133 79.7
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 4.3e-13 79.0 159 73.0
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 7.4e-13 78.2 158 70.3
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 9.6e-13 77.8 159 74.2
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 9.6e-13 77.8 117 86.3
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 2.1e-12 76.6 164 76.2
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 3.6e-12 75.9 160 69.4
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 3.6e-12 75.9 132 68.2
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 6.2e-12 75.1 134 76.9
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 6.2e-12 75.1 118 89.8
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 8.1e-12 74.7 159 68.6
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 8.1e-12 74.7 155 74.8
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 1.4e-11 73.9 130 81.5
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 1.4e-11 73.9 153 51.6
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 1.4e-11 73.9 146 70.5
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 3.1e-11 72.8 75 56.0
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 5.3e-11 72.0 173 63.0
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 6.9e-11 71.6 153 71.2
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 6.9e-11 71.6 118 83.1
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 9.0e-11 71.2 157 60.5
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 9.0e-11 71.2 157 66.2
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 1.2e-10 70.9 168 61.9
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 1.2e-10 70.9 167 65.9
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 1.2e-10 70.9 168 61.9
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-10 70.9 159 81.8
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 2.6e-10 69.7 167 65.3
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 3.4e-10 69.3 118 89.8
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.4e-10 69.3 118 89.8
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.4e-10 69.3 118 89.8
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.5e-10 68.9 45 84.4
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 4.5e-10 68.9 126 73.0
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 5.8e-10 68.6 160 81.2
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 5.8e-10 68.6 157 61.1
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 7.6e-10 68.2 160 52.5
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 9.9e-10 67.8 117 89.7
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 9.9e-10 67.8 160 59.4
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 1.3e-09 67.4 167 74.3
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 2.2e-09 66.6 141 66.0
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.2e-09 66.6 155 68.4
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.2e-09 66.6 76 71.1
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.2e-09 66.6 133 69.2
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 2.9e-09 66.2 73 78.1
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.9e-09 66.2 129 62.8
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 2.9e-09 66.2 192 56.8
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 3.8e-09 65.9 71 56.3
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 8.4e-09 64.7 117 81.2
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 8.4e-09 64.7 75 50.7
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.4e-08 63.9 157 64.3
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.4e-08 63.9 157 62.4
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 1.4e-08 63.9 80 48.8
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.9e-08 63.5 156 50.6
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 2.4e-08 63.2 134 62.7
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.4e-08 63.2 49 69.4
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 2.4e-08 63.2 49 69.4
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 3.2e-08 62.8 49 69.4
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 3.2e-08 62.8 49 65.3
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.2e-08 62.8 164 57.9
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.2e-08 62.4 157 60.5
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 4.2e-08 62.4 49 67.3
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 7.1e-08 61.6 150 55.3
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 7.1e-08 61.6 46 69.6
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 9.3e-08 61.2 150 68.7
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 9.3e-08 61.2 70 50.0
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 1.6e-07 60.5 71 70.4
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.1e-07 60.1 117 84.6
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 2.7e-07 59.7 74 63.5
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 2.7e-07 59.7 75 65.3
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 2.7e-07 59.7 75 65.3
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.7e-07 59.7 160 67.5
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 3.5e-07 59.3 126 34.9
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 3.5e-07 59.3 47 66.0
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 3.5e-07 59.3 70 52.9
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 4.6e-07 58.9 74 66.2
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.6e-07 58.9 74 62.2
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 6.0e-07 58.5 77 68.8
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 7.9e-07 58.2 79 46.8
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 7.9e-07 58.2 159 67.9
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 7.9e-07 58.2 49 63.3
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.8e-06 57.0 70 47.1
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 2.3e-06 56.6 90 43.3
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 3.0e-06 56.2 72 63.9
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 3.0e-06 56.2 69 52.2
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 3.0e-06 56.2 70 50.0
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.0e-06 56.2 75 62.7
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 3.0e-06 56.2 75 46.7
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 3.9e-06 55.8 44 68.2
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 3.9e-06 55.8 109 89.0


User provided reference genes

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