Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 5.3e-70 267.7 148 100.0
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 2.6e-61 238.8 148 87.8
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 8.0e-58 227.3 148 84.5
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 2.6e-56 222.2 148 82.4
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.8e-55 218.8 143 84.6
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.8e-54 216.1 144 82.6
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.4e-54 215.7 144 82.6
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 7.0e-54 214.2 147 78.2
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.0e-53 212.6 143 81.8
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 4.5e-53 211.5 148 75.7
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.1e-51 206.8 148 73.6
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 75.0
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 3.2e-51 205.3 148 73.6
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 4.2e-51 204.9 148 73.0
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 74.3
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 73.6
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 74.3
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.4e-51 203.8 148 72.3
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.6e-50 203.0 148 73.6
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 2.1e-50 202.6 148 71.6
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.6e-50 201.8 148 71.6
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.6e-50 201.8 148 71.6
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 8.0e-50 200.7 148 72.3
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 72.3
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 72.3
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 2.0e-48 196.1 148 70.9
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 2.6e-48 195.7 148 69.6
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 3.4e-48 195.3 148 68.9
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 5.7e-48 194.5 148 70.3
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.7e-47 193.0 148 69.6
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 6.3e-47 191.0 148 69.6
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.8e-46 189.5 143 72.7
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 3.1e-46 188.7 148 69.6
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 5.4e-46 188.0 148 69.6
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.4e-46 188.0 148 69.6
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 2.3e-44 182.6 145 66.2
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 5.0e-44 181.4 140 70.0
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 8.6e-44 180.6 150 68.7
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.5e-43 179.9 148 66.9
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.5e-43 179.1 150 66.7
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 7.2e-43 177.6 152 63.2
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 7.2e-43 177.6 148 68.2
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 7.2e-43 177.6 150 66.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 9.5e-43 177.2 148 66.9
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.6e-42 176.4 148 66.2
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.6e-42 176.4 148 67.6
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 2.8e-42 175.6 148 66.2
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 3.6e-42 175.3 150 65.3
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 4.0e-41 171.8 148 63.5
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 4.0e-41 171.8 151 66.2
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 5.2e-41 171.4 140 61.4
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.5e-40 169.9 143 66.4
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.4e-40 168.7 150 63.3
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 5.7e-40 167.9 151 64.9
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 9.8e-40 167.2 151 64.2
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.3e-39 166.8 118 78.8
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.7e-39 165.2 152 63.8
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 4.9e-39 164.9 150 62.0
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 8.3e-39 164.1 120 74.2
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.4e-38 163.3 119 73.1
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-38 162.2 119 73.1
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 3.1e-38 162.2 119 73.1
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 7.0e-38 161.0 148 63.5
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 7.0e-38 161.0 144 63.2
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 9.2e-38 160.6 148 66.2
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.6e-37 159.8 148 61.5
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 3.5e-37 158.7 140 62.9
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 3.8e-36 155.2 143 62.2
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 5.0e-36 154.8 148 63.5
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 6.6e-36 154.5 148 60.8
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 8.6e-36 154.1 152 61.8
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 8.6e-36 154.1 132 65.9
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-35 153.7 121 66.9
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.1e-35 153.7 138 59.4
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.1e-35 153.7 119 68.9
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.5e-35 153.3 150 58.0
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-35 152.9 114 71.9
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 2.5e-35 152.5 121 69.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.3e-35 152.1 149 57.7
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 3.3e-35 152.1 149 57.7
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 5.6e-35 151.4 114 71.9
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.6e-35 151.4 149 57.7
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 9.5e-35 150.6 155 58.1
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 4.7e-34 148.3 148 58.8
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 4.7e-34 148.3 148 58.8
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 58.8
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 58.8
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 58.8
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 58.8
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 58.8
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 6.1e-34 147.9 148 56.1
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 8.0e-34 147.5 148 59.5
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 3.0e-33 145.6 148 58.8
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 3.0e-33 145.6 148 58.8
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 4.0e-33 145.2 151 56.3
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 5.2e-33 144.8 148 58.1
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.9e-33 144.1 150 55.3
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 8.9e-33 144.1 148 57.4
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.5e-32 143.3 140 54.3
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.4e-32 141.7 150 54.7
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.2e-31 139.4 129 58.9
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.9e-31 138.3 114 66.7
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 6.4e-31 137.9 148 54.1
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 8.3e-31 137.5 149 53.7
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.9e-30 136.3 149 57.7
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.1e-30 135.2 138 57.2
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 4.1e-30 135.2 112 65.2
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 7.0e-30 134.4 149 57.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.6e-29 133.3 110 67.3
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.0e-28 129.0 150 52.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.0e-28 129.0 150 52.7
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 4.3e-27 125.2 119 58.8
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 2.8e-26 122.5 149 53.0
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.2e-24 117.1 151 49.7
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.5e-24 116.7 148 43.9
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.4e-24 115.5 125 52.8
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.3e-19 99.0 103 56.3
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.3e-19 98.6 103 57.3
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-18 97.1 79 63.3
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.6e-18 96.7 119 52.9
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 4.7e-18 95.1 75 68.0
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 1.4e-14 83.6 71 66.2
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 2.7e-13 79.3 92 54.3
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 6.0e-13 78.2 90 51.1
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.0e-12 77.4 59 69.5
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.7e-12 76.6 89 50.6
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 3.9e-12 75.5 62 67.7
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.9e-12 75.5 69 59.4
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 1.2e-10 70.5 136 39.0
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 3.6e-10 68.9 99 45.5
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.8e-09 66.6 144 41.7
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.8e-09 66.6 144 41.7
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 7.6e-08 61.2 130 33.1
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.2e-07 59.7 97 47.4
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 2.2e-07 59.7 90 47.8


User provided reference genes

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